Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22335

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22325 and RR42_RS22330 are separated by 31 nucleotidesRR42_RS22330 and RR42_RS22335 are separated by 414 nucleotidesRR42_RS22335 and RR42_RS22340 are separated by 32 nucleotides RR42_RS22325: RR42_RS22325 - hypothetical protein, at 349,168 to 350,265 _RS22325 RR42_RS22330: RR42_RS22330 - ester cyclase, at 350,297 to 350,800 _RS22330 RR42_RS22335: RR42_RS22335 - hemagglutinin, at 351,215 to 352,492 _RS22335 RR42_RS22340: RR42_RS22340 - peptidase, at 352,525 to 353,808 _RS22340 Position (kb) 351 352 353Strain fitness (log2 ratio) -2 -1 0 1at 350.299 kb on - strandat 350.622 kb on + strand, within RR42_RS22330at 350.622 kb on + strand, within RR42_RS22330at 350.623 kb on - strand, within RR42_RS22330at 350.623 kb on - strand, within RR42_RS22330at 350.679 kb on + strand, within RR42_RS22330at 350.679 kb on + strand, within RR42_RS22330at 350.871 kb on + strandat 350.872 kb on - strandat 351.001 kb on - strandat 351.005 kb on - strandat 351.064 kb on + strandat 351.155 kb on + strandat 351.156 kb on - strandat 351.159 kb on + strandat 351.159 kb on + strandat 351.230 kb on + strandat 351.241 kb on + strandat 351.242 kb on - strandat 351.506 kb on - strand, within RR42_RS22335at 351.559 kb on + strand, within RR42_RS22335at 351.559 kb on + strand, within RR42_RS22335at 351.559 kb on + strand, within RR42_RS22335at 351.559 kb on + strand, within RR42_RS22335at 352.031 kb on - strand, within RR42_RS22335at 352.031 kb on - strand, within RR42_RS22335at 352.032 kb on - strand, within RR42_RS22335at 352.150 kb on + strand, within RR42_RS22335at 352.237 kb on + strand, within RR42_RS22335at 352.237 kb on + strand, within RR42_RS22335at 352.238 kb on - strand, within RR42_RS22335at 352.494 kb on - strandat 352.524 kb on - strandat 352.524 kb on - strandat 352.590 kb on - strandat 352.592 kb on + strandat 352.592 kb on + strandat 352.592 kb on + strandat 352.593 kb on - strandat 352.593 kb on - strandat 352.808 kb on + strand, within RR42_RS22340at 352.828 kb on + strand, within RR42_RS22340at 353.088 kb on + strand, within RR42_RS22340at 353.089 kb on - strand, within RR42_RS22340at 353.089 kb on - strand, within RR42_RS22340at 353.307 kb on + strand, within RR42_RS22340at 353.307 kb on + strand, within RR42_RS22340at 353.307 kb on + strand, within RR42_RS22340at 353.307 kb on + strand, within RR42_RS22340at 353.307 kb on + strand, within RR42_RS22340at 353.307 kb on + strand, within RR42_RS22340at 353.307 kb on + strand, within RR42_RS22340at 353.308 kb on - strand, within RR42_RS22340at 353.308 kb on - strand, within RR42_RS22340at 353.308 kb on - strand, within RR42_RS22340at 353.308 kb on - strand, within RR42_RS22340at 353.308 kb on - strand, within RR42_RS22340at 353.308 kb on - strand, within RR42_RS22340at 353.308 kb on - strand, within RR42_RS22340at 353.308 kb on - strand, within RR42_RS22340at 353.376 kb on - strand, within RR42_RS22340at 353.475 kb on - strand, within RR42_RS22340

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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350,299 - +0.0
350,622 + RR42_RS22330 0.64 +0.3
350,622 + RR42_RS22330 0.64 -0.7
350,623 - RR42_RS22330 0.65 -0.5
350,623 - RR42_RS22330 0.65 +0.6
350,679 + RR42_RS22330 0.76 -0.5
350,679 + RR42_RS22330 0.76 -0.4
350,871 + +0.2
350,872 - -0.4
351,001 - -0.9
351,005 - +0.3
351,064 + -1.7
351,155 + +0.8
351,156 - +0.3
351,159 + -0.0
351,159 + +0.2
351,230 + +0.3
351,241 + +0.4
351,242 - -0.1
351,506 - RR42_RS22335 0.23 -0.1
351,559 + RR42_RS22335 0.27 +0.4
351,559 + RR42_RS22335 0.27 +0.4
351,559 + RR42_RS22335 0.27 +0.9
351,559 + RR42_RS22335 0.27 -1.5
352,031 - RR42_RS22335 0.64 -0.7
352,031 - RR42_RS22335 0.64 +0.5
352,032 - RR42_RS22335 0.64 +1.1
352,150 + RR42_RS22335 0.73 +0.7
352,237 + RR42_RS22335 0.80 -0.2
352,237 + RR42_RS22335 0.80 +1.2
352,238 - RR42_RS22335 0.80 -0.1
352,494 - -0.8
352,524 - -0.1
352,524 - -1.4
352,590 - +0.5
352,592 + +0.8
352,592 + -2.7
352,592 + -1.0
352,593 - -0.2
352,593 - +0.6
352,808 + RR42_RS22340 0.22 -0.2
352,828 + RR42_RS22340 0.24 +1.3
353,088 + RR42_RS22340 0.44 +0.5
353,089 - RR42_RS22340 0.44 +0.3
353,089 - RR42_RS22340 0.44 -2.3
353,307 + RR42_RS22340 0.61 -2.5
353,307 + RR42_RS22340 0.61 +1.2
353,307 + RR42_RS22340 0.61 +0.1
353,307 + RR42_RS22340 0.61 +0.6
353,307 + RR42_RS22340 0.61 -0.1
353,307 + RR42_RS22340 0.61 -1.5
353,307 + RR42_RS22340 0.61 +0.1
353,308 - RR42_RS22340 0.61 +0.6
353,308 - RR42_RS22340 0.61 -0.1
353,308 - RR42_RS22340 0.61 +1.4
353,308 - RR42_RS22340 0.61 +0.3
353,308 - RR42_RS22340 0.61 +0.7
353,308 - RR42_RS22340 0.61 +0.6
353,308 - RR42_RS22340 0.61 +0.4
353,308 - RR42_RS22340 0.61 +0.6
353,376 - RR42_RS22340 0.66 -0.9
353,475 - RR42_RS22340 0.74 -0.5

Or see this region's nucleotide sequence