Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21950 and RR42_RS21955 are separated by 19 nucleotides RR42_RS21955 and RR42_RS21960 are separated by 195 nucleotides RR42_RS21960 and RR42_RS21965 are separated by 126 nucleotides
RR42_RS21950: RR42_RS21950 - hypothetical protein, at 250,144 to 251,877
_RS21950
RR42_RS21955: RR42_RS21955 - hypothetical protein, at 251,897 to 252,097
_RS21955
RR42_RS21960: RR42_RS21960 - cysteine synthase, at 252,293 to 253,210
_RS21960
RR42_RS21965: RR42_RS21965 - hypothetical protein, at 253,337 to 254,548
_RS21965
Position (kb) 252
253
254 Strain fitness (log2 ratio) -2
-1
0
1 at 251.331 kb on + strand, within RR42_RS21950 at 251.331 kb on + strand, within RR42_RS21950 at 251.331 kb on + strand, within RR42_RS21950 at 251.331 kb on + strand, within RR42_RS21950 at 251.332 kb on - strand, within RR42_RS21950 at 251.332 kb on - strand, within RR42_RS21950 at 251.332 kb on - strand, within RR42_RS21950 at 251.332 kb on - strand, within RR42_RS21950 at 251.382 kb on + strand, within RR42_RS21950 at 251.383 kb on - strand, within RR42_RS21950 at 251.383 kb on - strand, within RR42_RS21950 at 251.383 kb on - strand, within RR42_RS21950 at 251.383 kb on - strand, within RR42_RS21950 at 251.504 kb on - strand, within RR42_RS21950 at 251.702 kb on + strand, within RR42_RS21950 at 251.789 kb on - strand at 251.854 kb on + strand at 251.854 kb on + strand at 251.854 kb on + strand at 251.855 kb on - strand at 251.855 kb on - strand at 251.855 kb on - strand at 251.898 kb on + strand at 251.898 kb on + strand at 251.899 kb on - strand at 252.039 kb on - strand, within RR42_RS21955 at 252.039 kb on - strand, within RR42_RS21955 at 252.081 kb on + strand at 252.081 kb on + strand at 252.082 kb on - strand at 252.082 kb on - strand at 252.082 kb on - strand at 252.239 kb on - strand at 252.239 kb on - strand at 252.239 kb on - strand at 252.239 kb on - strand at 252.324 kb on + strand at 252.325 kb on - strand at 252.549 kb on - strand, within RR42_RS21960 at 252.618 kb on + strand, within RR42_RS21960 at 252.619 kb on - strand, within RR42_RS21960 at 252.670 kb on + strand, within RR42_RS21960 at 252.671 kb on - strand, within RR42_RS21960 at 252.671 kb on - strand, within RR42_RS21960 at 252.766 kb on + strand, within RR42_RS21960 at 252.891 kb on + strand, within RR42_RS21960 at 252.955 kb on - strand, within RR42_RS21960 at 252.955 kb on - strand, within RR42_RS21960 at 252.995 kb on - strand, within RR42_RS21960 at 253.174 kb on + strand at 253.175 kb on - strand at 253.215 kb on + strand at 253.215 kb on + strand at 253.318 kb on + strand at 253.318 kb on + strand at 253.318 kb on + strand at 253.318 kb on + strand at 253.319 kb on - strand at 253.319 kb on - strand at 253.319 kb on - strand at 253.339 kb on - strand at 253.339 kb on - strand at 253.339 kb on - strand at 253.437 kb on + strand at 253.438 kb on - strand at 253.438 kb on - strand at 253.438 kb on - strand at 253.622 kb on - strand, within RR42_RS21965 at 253.622 kb on - strand, within RR42_RS21965 at 253.748 kb on - strand, within RR42_RS21965 at 253.748 kb on - strand, within RR42_RS21965 at 253.759 kb on - strand, within RR42_RS21965 at 254.046 kb on + strand, within RR42_RS21965 at 254.047 kb on - strand, within RR42_RS21965 at 254.047 kb on - strand, within RR42_RS21965 at 254.181 kb on + strand, within RR42_RS21965 at 254.181 kb on + strand, within RR42_RS21965
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 251,331 + RR42_RS21950 0.68 +0.0 251,331 + RR42_RS21950 0.68 -0.0 251,331 + RR42_RS21950 0.68 -0.1 251,331 + RR42_RS21950 0.68 -0.5 251,332 - RR42_RS21950 0.69 +0.3 251,332 - RR42_RS21950 0.69 +0.5 251,332 - RR42_RS21950 0.69 +0.4 251,332 - RR42_RS21950 0.69 +0.3 251,382 + RR42_RS21950 0.71 -1.0 251,383 - RR42_RS21950 0.71 +0.3 251,383 - RR42_RS21950 0.71 +0.7 251,383 - RR42_RS21950 0.71 -0.4 251,383 - RR42_RS21950 0.71 +0.3 251,504 - RR42_RS21950 0.78 +1.5 251,702 + RR42_RS21950 0.90 -0.0 251,789 - -0.5 251,854 + +0.1 251,854 + -0.4 251,854 + -0.2 251,855 - -0.4 251,855 - -2.6 251,855 - -0.3 251,898 + -1.0 251,898 + -0.3 251,899 - -0.4 252,039 - RR42_RS21955 0.71 -0.5 252,039 - RR42_RS21955 0.71 -0.1 252,081 + +0.7 252,081 + -0.3 252,082 - +0.1 252,082 - +1.7 252,082 - +0.3 252,239 - -0.7 252,239 - -1.8 252,239 - -0.7 252,239 - +0.1 252,324 + +1.0 252,325 - +0.1 252,549 - RR42_RS21960 0.28 -0.7 252,618 + RR42_RS21960 0.35 +0.6 252,619 - RR42_RS21960 0.36 -0.1 252,670 + RR42_RS21960 0.41 +0.0 252,671 - RR42_RS21960 0.41 -2.1 252,671 - RR42_RS21960 0.41 -2.2 252,766 + RR42_RS21960 0.52 -0.9 252,891 + RR42_RS21960 0.65 +0.1 252,955 - RR42_RS21960 0.72 -0.5 252,955 - RR42_RS21960 0.72 -1.1 252,995 - RR42_RS21960 0.76 -0.1 253,174 + -0.8 253,175 - +0.2 253,215 + +0.8 253,215 + +0.2 253,318 + -1.0 253,318 + +0.0 253,318 + +0.7 253,318 + +0.1 253,319 - +1.4 253,319 - -0.0 253,319 - -0.9 253,339 - +0.3 253,339 - -1.2 253,339 - +0.3 253,437 + -0.7 253,438 - +0.5 253,438 - -0.4 253,438 - +0.6 253,622 - RR42_RS21965 0.24 -0.2 253,622 - RR42_RS21965 0.24 +1.1 253,748 - RR42_RS21965 0.34 -0.2 253,748 - RR42_RS21965 0.34 -0.5 253,759 - RR42_RS21965 0.35 +1.4 254,046 + RR42_RS21965 0.58 +1.1 254,047 - RR42_RS21965 0.59 -0.3 254,047 - RR42_RS21965 0.59 +0.5 254,181 + RR42_RS21965 0.70 +0.3 254,181 + RR42_RS21965 0.70 -0.8
Or see this region's nucleotide sequence