Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21845 and RR42_RS21850 are separated by 7 nucleotides RR42_RS21850 and RR42_RS21855 are separated by 30 nucleotides RR42_RS21855 and RR42_RS21860 are separated by 184 nucleotides
RR42_RS21845: RR42_RS21845 - LacI family transcriptional regulator, at 228,543 to 229,529
_RS21845
RR42_RS21850: RR42_RS21850 - 3-oxoadipate enol-lactonase, at 229,537 to 230,325
_RS21850
RR42_RS21855: RR42_RS21855 - hypothetical protein, at 230,356 to 230,667
_RS21855
RR42_RS21860: RR42_RS21860 - hypothetical protein, at 230,852 to 231,661
_RS21860
Position (kb) 229
230
231 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 228.554 kb on - strand at 228.633 kb on + strand at 228.633 kb on + strand at 228.634 kb on - strand at 228.880 kb on - strand, within RR42_RS21845 at 228.930 kb on - strand, within RR42_RS21845 at 229.014 kb on + strand, within RR42_RS21845 at 229.014 kb on + strand, within RR42_RS21845 at 229.014 kb on + strand, within RR42_RS21845 at 229.014 kb on + strand, within RR42_RS21845 at 229.015 kb on - strand, within RR42_RS21845 at 229.020 kb on + strand, within RR42_RS21845 at 229.020 kb on + strand, within RR42_RS21845 at 229.020 kb on + strand, within RR42_RS21845 at 229.020 kb on + strand, within RR42_RS21845 at 229.020 kb on + strand, within RR42_RS21845 at 229.020 kb on + strand, within RR42_RS21845 at 229.021 kb on - strand, within RR42_RS21845 at 229.021 kb on - strand, within RR42_RS21845 at 229.021 kb on - strand, within RR42_RS21845 at 229.021 kb on - strand, within RR42_RS21845 at 229.021 kb on - strand, within RR42_RS21845 at 229.021 kb on - strand, within RR42_RS21845 at 229.108 kb on - strand, within RR42_RS21845 at 229.158 kb on + strand, within RR42_RS21845 at 229.158 kb on + strand, within RR42_RS21845 at 229.158 kb on + strand, within RR42_RS21845 at 229.159 kb on - strand, within RR42_RS21845 at 229.159 kb on - strand, within RR42_RS21845 at 229.159 kb on - strand, within RR42_RS21845 at 229.159 kb on - strand, within RR42_RS21845 at 229.160 kb on + strand, within RR42_RS21845 at 229.160 kb on + strand, within RR42_RS21845 at 229.160 kb on + strand, within RR42_RS21845 at 229.160 kb on + strand, within RR42_RS21845 at 229.161 kb on - strand, within RR42_RS21845 at 229.161 kb on - strand, within RR42_RS21845 at 229.161 kb on - strand, within RR42_RS21845 at 229.161 kb on - strand, within RR42_RS21845 at 229.293 kb on + strand, within RR42_RS21845 at 229.293 kb on + strand, within RR42_RS21845 at 229.293 kb on + strand, within RR42_RS21845 at 229.484 kb on + strand at 229.485 kb on - strand at 229.573 kb on + strand at 229.573 kb on + strand at 229.574 kb on - strand at 229.574 kb on - strand at 229.574 kb on - strand at 229.694 kb on - strand, within RR42_RS21850 at 230.239 kb on + strand, within RR42_RS21850 at 230.385 kb on + strand at 230.386 kb on - strand at 230.386 kb on - strand at 230.400 kb on + strand, within RR42_RS21855 at 230.401 kb on - strand, within RR42_RS21855 at 230.410 kb on - strand, within RR42_RS21855 at 230.410 kb on - strand, within RR42_RS21855 at 230.430 kb on + strand, within RR42_RS21855 at 230.430 kb on + strand, within RR42_RS21855 at 230.430 kb on + strand, within RR42_RS21855 at 230.431 kb on - strand, within RR42_RS21855 at 230.431 kb on - strand, within RR42_RS21855 at 230.484 kb on - strand, within RR42_RS21855 at 230.484 kb on - strand, within RR42_RS21855 at 230.484 kb on - strand, within RR42_RS21855 at 230.670 kb on + strand at 230.670 kb on - strand at 230.790 kb on + strand at 230.873 kb on + strand at 230.873 kb on + strand at 230.873 kb on + strand at 230.874 kb on - strand at 230.874 kb on - strand at 230.874 kb on - strand at 230.874 kb on - strand at 230.874 kb on - strand at 230.875 kb on + strand at 231.114 kb on + strand, within RR42_RS21860 at 231.114 kb on + strand, within RR42_RS21860 at 231.114 kb on + strand, within RR42_RS21860 at 231.114 kb on + strand, within RR42_RS21860 at 231.114 kb on + strand, within RR42_RS21860 at 231.115 kb on - strand, within RR42_RS21860 at 231.115 kb on - strand, within RR42_RS21860 at 231.115 kb on - strand, within RR42_RS21860 at 231.129 kb on + strand, within RR42_RS21860 at 231.130 kb on - strand, within RR42_RS21860 at 231.191 kb on + strand, within RR42_RS21860 at 231.191 kb on + strand, within RR42_RS21860 at 231.203 kb on - strand, within RR42_RS21860
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 228,554 - +0.1 228,633 + +0.2 228,633 + -0.3 228,634 - +0.1 228,880 - RR42_RS21845 0.34 +0.6 228,930 - RR42_RS21845 0.39 +0.3 229,014 + RR42_RS21845 0.48 -0.6 229,014 + RR42_RS21845 0.48 -1.1 229,014 + RR42_RS21845 0.48 +0.1 229,014 + RR42_RS21845 0.48 -0.1 229,015 - RR42_RS21845 0.48 -0.0 229,020 + RR42_RS21845 0.48 -0.7 229,020 + RR42_RS21845 0.48 +0.3 229,020 + RR42_RS21845 0.48 -0.2 229,020 + RR42_RS21845 0.48 -0.3 229,020 + RR42_RS21845 0.48 +0.9 229,020 + RR42_RS21845 0.48 -0.1 229,021 - RR42_RS21845 0.48 -0.0 229,021 - RR42_RS21845 0.48 -2.4 229,021 - RR42_RS21845 0.48 +1.1 229,021 - RR42_RS21845 0.48 -0.7 229,021 - RR42_RS21845 0.48 -0.2 229,021 - RR42_RS21845 0.48 -1.4 229,108 - RR42_RS21845 0.57 -0.0 229,158 + RR42_RS21845 0.62 +0.4 229,158 + RR42_RS21845 0.62 +0.3 229,158 + RR42_RS21845 0.62 -0.4 229,159 - RR42_RS21845 0.62 +0.9 229,159 - RR42_RS21845 0.62 +0.2 229,159 - RR42_RS21845 0.62 +0.1 229,159 - RR42_RS21845 0.62 +0.4 229,160 + RR42_RS21845 0.63 -0.4 229,160 + RR42_RS21845 0.63 -0.9 229,160 + RR42_RS21845 0.63 +0.5 229,160 + RR42_RS21845 0.63 +0.2 229,161 - RR42_RS21845 0.63 -0.7 229,161 - RR42_RS21845 0.63 +0.9 229,161 - RR42_RS21845 0.63 +0.3 229,161 - RR42_RS21845 0.63 -0.2 229,293 + RR42_RS21845 0.76 -0.7 229,293 + RR42_RS21845 0.76 -0.2 229,293 + RR42_RS21845 0.76 +0.3 229,484 + +0.3 229,485 - +0.5 229,573 + -0.3 229,573 + -0.0 229,574 - +0.0 229,574 - -0.6 229,574 - -0.1 229,694 - RR42_RS21850 0.20 -1.0 230,239 + RR42_RS21850 0.89 -0.9 230,385 + -0.1 230,386 - -0.5 230,386 - +0.1 230,400 + RR42_RS21855 0.14 -0.1 230,401 - RR42_RS21855 0.14 +0.5 230,410 - RR42_RS21855 0.17 -0.8 230,410 - RR42_RS21855 0.17 -0.1 230,430 + RR42_RS21855 0.24 -2.1 230,430 + RR42_RS21855 0.24 -1.5 230,430 + RR42_RS21855 0.24 -0.6 230,431 - RR42_RS21855 0.24 +0.1 230,431 - RR42_RS21855 0.24 -0.3 230,484 - RR42_RS21855 0.41 +1.3 230,484 - RR42_RS21855 0.41 +0.6 230,484 - RR42_RS21855 0.41 -0.6 230,670 + -0.3 230,670 - -3.4 230,790 + -1.0 230,873 + -0.2 230,873 + -0.2 230,873 + -0.3 230,874 - -0.3 230,874 - +0.0 230,874 - -2.1 230,874 - +0.6 230,874 - -1.4 230,875 + -0.5 231,114 + RR42_RS21860 0.32 -0.0 231,114 + RR42_RS21860 0.32 +0.9 231,114 + RR42_RS21860 0.32 -0.0 231,114 + RR42_RS21860 0.32 -1.3 231,114 + RR42_RS21860 0.32 -0.3 231,115 - RR42_RS21860 0.32 +0.5 231,115 - RR42_RS21860 0.32 -0.3 231,115 - RR42_RS21860 0.32 -1.7 231,129 + RR42_RS21860 0.34 +0.0 231,130 - RR42_RS21860 0.34 +0.2 231,191 + RR42_RS21860 0.42 -0.8 231,191 + RR42_RS21860 0.42 -0.3 231,203 - RR42_RS21860 0.43 +0.3
Or see this region's nucleotide sequence