Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20960

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS20955 and RR42_RS20960 are separated by 889 nucleotidesRR42_RS20960 and RR42_RS20965 are separated by 44 nucleotides RR42_RS20955: RR42_RS20955 - LuxR family transcriptional regulator, at 28,248 to 29,189 _RS20955 RR42_RS20960: RR42_RS20960 - SAM-dependent methyltransferase, at 30,079 to 30,891 _RS20960 RR42_RS20965: RR42_RS20965 - transferase, at 30,936 to 32,123 _RS20965 Position (kb) 30 31Strain fitness (log2 ratio) -1 0 1 2at 29.195 kb on + strandat 29.243 kb on + strandat 29.287 kb on + strandat 29.288 kb on - strandat 29.414 kb on + strandat 29.544 kb on - strandat 29.874 kb on - strandat 29.898 kb on - strandat 29.957 kb on + strandat 30.126 kb on + strandat 30.307 kb on + strand, within RR42_RS20960at 30.307 kb on + strand, within RR42_RS20960at 30.307 kb on + strand, within RR42_RS20960at 30.307 kb on + strand, within RR42_RS20960at 30.308 kb on - strand, within RR42_RS20960at 30.308 kb on - strand, within RR42_RS20960at 30.308 kb on - strand, within RR42_RS20960at 30.354 kb on - strand, within RR42_RS20960at 30.451 kb on + strand, within RR42_RS20960at 30.452 kb on - strand, within RR42_RS20960at 30.701 kb on - strand, within RR42_RS20960at 30.751 kb on - strand, within RR42_RS20960at 30.865 kb on + strandat 31.180 kb on - strand, within RR42_RS20965at 31.438 kb on - strand, within RR42_RS20965at 31.881 kb on - strand, within RR42_RS20965at 31.881 kb on - strand, within RR42_RS20965

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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29,195 + +1.3
29,243 + -0.6
29,287 + +0.2
29,288 - +0.5
29,414 + -0.8
29,544 - +1.8
29,874 - +2.6
29,898 - -0.6
29,957 + -0.2
30,126 + -0.3
30,307 + RR42_RS20960 0.28 +0.0
30,307 + RR42_RS20960 0.28 -0.3
30,307 + RR42_RS20960 0.28 +0.4
30,307 + RR42_RS20960 0.28 -0.6
30,308 - RR42_RS20960 0.28 -0.6
30,308 - RR42_RS20960 0.28 +0.3
30,308 - RR42_RS20960 0.28 +0.1
30,354 - RR42_RS20960 0.34 +0.9
30,451 + RR42_RS20960 0.46 +0.7
30,452 - RR42_RS20960 0.46 -0.6
30,701 - RR42_RS20960 0.77 +0.9
30,751 - RR42_RS20960 0.83 -1.3
30,865 + -0.7
31,180 - RR42_RS20965 0.21 +1.4
31,438 - RR42_RS20965 0.42 +0.1
31,881 - RR42_RS20965 0.80 +0.2
31,881 - RR42_RS20965 0.80 -0.1

Or see this region's nucleotide sequence