Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20950 and RR42_RS20955 are separated by 359 nucleotides RR42_RS20955 and RR42_RS20960 are separated by 889 nucleotides
RR42_RS20950: RR42_RS20950 - multidrug MFS transporter, at 26,794 to 27,888
_RS20950
RR42_RS20955: RR42_RS20955 - LuxR family transcriptional regulator, at 28,248 to 29,189
_RS20955
RR42_RS20960: RR42_RS20960 - SAM-dependent methyltransferase, at 30,079 to 30,891
_RS20960
Position (kb) 28
29
30 Strain fitness (log2 ratio) -2
-1
0
1
2 at 27.383 kb on + strand, within RR42_RS20950 at 27.383 kb on + strand, within RR42_RS20950 at 27.384 kb on - strand, within RR42_RS20950 at 27.384 kb on - strand, within RR42_RS20950 at 27.551 kb on + strand, within RR42_RS20950 at 27.551 kb on + strand, within RR42_RS20950 at 27.552 kb on - strand, within RR42_RS20950 at 27.687 kb on - strand, within RR42_RS20950 at 28.031 kb on + strand at 28.032 kb on - strand at 28.208 kb on + strand at 28.208 kb on + strand at 28.209 kb on - strand at 28.209 kb on - strand at 28.209 kb on - strand at 28.297 kb on - strand at 28.423 kb on - strand, within RR42_RS20955 at 28.438 kb on + strand, within RR42_RS20955 at 28.438 kb on + strand, within RR42_RS20955 at 28.439 kb on - strand, within RR42_RS20955 at 28.478 kb on + strand, within RR42_RS20955 at 28.488 kb on - strand, within RR42_RS20955 at 28.541 kb on - strand, within RR42_RS20955 at 28.541 kb on - strand, within RR42_RS20955 at 28.541 kb on - strand, within RR42_RS20955 at 28.541 kb on - strand, within RR42_RS20955 at 28.756 kb on + strand, within RR42_RS20955 at 28.828 kb on + strand, within RR42_RS20955 at 28.829 kb on - strand, within RR42_RS20955 at 28.829 kb on - strand, within RR42_RS20955 at 28.829 kb on - strand, within RR42_RS20955 at 29.195 kb on + strand at 29.243 kb on + strand at 29.287 kb on + strand at 29.288 kb on - strand at 29.414 kb on + strand at 29.544 kb on - strand at 29.874 kb on - strand at 29.898 kb on - strand at 29.957 kb on + strand at 30.126 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 27,383 + RR42_RS20950 0.54 +0.6 27,383 + RR42_RS20950 0.54 +0.6 27,384 - RR42_RS20950 0.54 +0.3 27,384 - RR42_RS20950 0.54 +0.3 27,551 + RR42_RS20950 0.69 +0.0 27,551 + RR42_RS20950 0.69 +0.6 27,552 - RR42_RS20950 0.69 +1.1 27,687 - RR42_RS20950 0.82 +0.6 28,031 + -0.3 28,032 - -0.2 28,208 + +0.3 28,208 + -1.8 28,209 - +0.5 28,209 - +0.0 28,209 - +0.4 28,297 - -0.4 28,423 - RR42_RS20955 0.19 +0.3 28,438 + RR42_RS20955 0.20 +0.3 28,438 + RR42_RS20955 0.20 -0.2 28,439 - RR42_RS20955 0.20 +0.2 28,478 + RR42_RS20955 0.24 +0.6 28,488 - RR42_RS20955 0.25 +0.7 28,541 - RR42_RS20955 0.31 +0.0 28,541 - RR42_RS20955 0.31 -1.5 28,541 - RR42_RS20955 0.31 -0.3 28,541 - RR42_RS20955 0.31 +0.3 28,756 + RR42_RS20955 0.54 +0.8 28,828 + RR42_RS20955 0.62 -0.6 28,829 - RR42_RS20955 0.62 -0.0 28,829 - RR42_RS20955 0.62 +0.6 28,829 - RR42_RS20955 0.62 -2.5 29,195 + +1.3 29,243 + -0.6 29,287 + +0.2 29,288 - +0.5 29,414 + -0.8 29,544 - +1.8 29,874 - +2.6 29,898 - -0.6 29,957 + -0.2 30,126 + -0.3
Or see this region's nucleotide sequence