Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19915 and RR42_RS19920 are separated by 44 nucleotides RR42_RS19920 and RR42_RS19925 are separated by 288 nucleotides RR42_RS19925 and RR42_RS19930 are separated by 27 nucleotides
RR42_RS19915: RR42_RS19915 - SPFH domain/Band 7 family protein 2, at 4,301,244 to 4,302,278
_RS19915
RR42_RS19920: RR42_RS19920 - membrane protein, at 4,302,323 to 4,302,709
_RS19920
RR42_RS19925: RR42_RS19925 - spermidine synthase, at 4,302,998 to 4,304,509
_RS19925
RR42_RS19930: RR42_RS19930 - amine oxidase, at 4,304,537 to 4,306,255
_RS19930
Position (kb) 4302
4303
4304
4305 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4302.044 kb on - strand, within RR42_RS19915 at 4302.044 kb on - strand, within RR42_RS19915 at 4302.194 kb on - strand at 4302.208 kb on - strand at 4302.245 kb on + strand at 4302.246 kb on - strand at 4302.367 kb on + strand, within RR42_RS19920 at 4302.394 kb on + strand, within RR42_RS19920 at 4302.637 kb on - strand, within RR42_RS19920 at 4302.637 kb on - strand, within RR42_RS19920 at 4302.637 kb on - strand, within RR42_RS19920 at 4302.690 kb on + strand at 4302.690 kb on + strand at 4302.696 kb on + strand at 4302.696 kb on + strand at 4302.697 kb on - strand at 4302.697 kb on - strand at 4302.768 kb on + strand at 4302.768 kb on + strand at 4302.802 kb on - strand at 4302.840 kb on + strand at 4302.841 kb on - strand at 4302.841 kb on - strand at 4302.841 kb on - strand at 4302.842 kb on + strand at 4303.085 kb on + strand at 4303.085 kb on + strand at 4303.085 kb on + strand at 4303.086 kb on - strand at 4303.086 kb on - strand at 4303.086 kb on - strand at 4303.134 kb on - strand at 4303.173 kb on - strand, within RR42_RS19925 at 4303.304 kb on + strand, within RR42_RS19925 at 4303.335 kb on + strand, within RR42_RS19925 at 4303.335 kb on + strand, within RR42_RS19925 at 4303.424 kb on + strand, within RR42_RS19925 at 4303.425 kb on - strand, within RR42_RS19925 at 4303.707 kb on - strand, within RR42_RS19925 at 4303.751 kb on + strand, within RR42_RS19925 at 4303.752 kb on - strand, within RR42_RS19925 at 4303.752 kb on - strand, within RR42_RS19925 at 4303.797 kb on - strand, within RR42_RS19925 at 4304.141 kb on + strand, within RR42_RS19925 at 4304.142 kb on - strand, within RR42_RS19925 at 4304.142 kb on - strand, within RR42_RS19925 at 4304.177 kb on + strand, within RR42_RS19925 at 4304.178 kb on - strand, within RR42_RS19925 at 4304.178 kb on - strand, within RR42_RS19925 at 4304.282 kb on + strand, within RR42_RS19925 at 4304.336 kb on + strand, within RR42_RS19925 at 4304.620 kb on + strand at 4304.921 kb on + strand, within RR42_RS19930 at 4304.921 kb on + strand, within RR42_RS19930 at 4304.922 kb on - strand, within RR42_RS19930 at 4305.308 kb on + strand, within RR42_RS19930 at 4305.308 kb on + strand, within RR42_RS19930 at 4305.308 kb on + strand, within RR42_RS19930 at 4305.308 kb on + strand, within RR42_RS19930 at 4305.308 kb on + strand, within RR42_RS19930 at 4305.308 kb on + strand, within RR42_RS19930 at 4305.309 kb on - strand, within RR42_RS19930 at 4305.309 kb on - strand, within RR42_RS19930 at 4305.309 kb on - strand, within RR42_RS19930 at 4305.317 kb on + strand, within RR42_RS19930 at 4305.377 kb on + strand, within RR42_RS19930 at 4305.378 kb on - strand, within RR42_RS19930
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 4,302,044 - RR42_RS19915 0.77 -0.5 4,302,044 - RR42_RS19915 0.77 -0.0 4,302,194 - +1.5 4,302,208 - -0.8 4,302,245 + -0.7 4,302,246 - -0.1 4,302,367 + RR42_RS19920 0.11 -0.6 4,302,394 + RR42_RS19920 0.18 -0.9 4,302,637 - RR42_RS19920 0.81 -0.1 4,302,637 - RR42_RS19920 0.81 -0.1 4,302,637 - RR42_RS19920 0.81 +0.1 4,302,690 + +0.5 4,302,690 + +0.3 4,302,696 + +0.6 4,302,696 + +0.3 4,302,697 - +0.5 4,302,697 - +0.4 4,302,768 + -0.8 4,302,768 + +0.8 4,302,802 - +0.7 4,302,840 + -0.1 4,302,841 - +0.7 4,302,841 - +0.7 4,302,841 - -2.7 4,302,842 + +0.5 4,303,085 + +0.1 4,303,085 + -0.6 4,303,085 + -0.9 4,303,086 - -0.2 4,303,086 - +0.4 4,303,086 - -0.4 4,303,134 - +0.4 4,303,173 - RR42_RS19925 0.12 -0.6 4,303,304 + RR42_RS19925 0.20 +0.0 4,303,335 + RR42_RS19925 0.22 -0.5 4,303,335 + RR42_RS19925 0.22 +0.4 4,303,424 + RR42_RS19925 0.28 +0.1 4,303,425 - RR42_RS19925 0.28 +0.8 4,303,707 - RR42_RS19925 0.47 -2.0 4,303,751 + RR42_RS19925 0.50 -0.3 4,303,752 - RR42_RS19925 0.50 +0.1 4,303,752 - RR42_RS19925 0.50 +1.8 4,303,797 - RR42_RS19925 0.53 +1.9 4,304,141 + RR42_RS19925 0.76 -0.0 4,304,142 - RR42_RS19925 0.76 -0.1 4,304,142 - RR42_RS19925 0.76 +0.4 4,304,177 + RR42_RS19925 0.78 +1.1 4,304,178 - RR42_RS19925 0.78 +1.0 4,304,178 - RR42_RS19925 0.78 -0.3 4,304,282 + RR42_RS19925 0.85 +1.0 4,304,336 + RR42_RS19925 0.88 +0.7 4,304,620 + -0.1 4,304,921 + RR42_RS19930 0.22 +0.1 4,304,921 + RR42_RS19930 0.22 -0.5 4,304,922 - RR42_RS19930 0.22 +0.5 4,305,308 + RR42_RS19930 0.45 +0.2 4,305,308 + RR42_RS19930 0.45 -0.3 4,305,308 + RR42_RS19930 0.45 -1.9 4,305,308 + RR42_RS19930 0.45 -0.7 4,305,308 + RR42_RS19930 0.45 -0.6 4,305,308 + RR42_RS19930 0.45 -1.9 4,305,309 - RR42_RS19930 0.45 -0.3 4,305,309 - RR42_RS19930 0.45 -0.2 4,305,309 - RR42_RS19930 0.45 -0.3 4,305,317 + RR42_RS19930 0.45 +0.6 4,305,377 + RR42_RS19930 0.49 +1.4 4,305,378 - RR42_RS19930 0.49 +0.9
Or see this region's nucleotide sequence