Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS17680 and RR42_RS17685 are separated by 112 nucleotides RR42_RS17685 and RR42_RS17690 are separated by 251 nucleotides RR42_RS17690 and RR42_RS17695 are separated by 158 nucleotides RR42_RS17695 and RR42_RS17700 are separated by 183 nucleotides
RR42_RS17680: RR42_RS17680 - UDP-N-acetylmuramate--alanine ligase, at 3,825,907 to 3,826,620
_RS17680
RR42_RS17685: RR42_RS17685 - alkyl hydroperoxide reductase, at 3,826,733 to 3,827,281
_RS17685
RR42_RS17690: RR42_RS17690 - 3-dehydroquinate dehydratase, at 3,827,533 to 3,827,982
_RS17690
RR42_RS17695: RR42_RS17695 - acetyl-CoA carboxylase, at 3,828,141 to 3,828,599
_RS17695
RR42_RS17700: RR42_RS17700 - acetyl-CoA carboxylase, at 3,828,783 to 3,830,150
_RS17700
Position (kb)
3827
3828 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3826.698 kb on + strand at 3826.698 kb on + strand at 3826.698 kb on + strand at 3826.698 kb on + strand at 3826.698 kb on + strand at 3826.699 kb on - strand at 3826.699 kb on - strand at 3826.699 kb on - strand at 3826.699 kb on - strand at 3826.699 kb on - strand at 3826.699 kb on - strand at 3826.717 kb on + strand at 3826.717 kb on + strand at 3826.718 kb on - strand at 3826.718 kb on - strand at 3826.832 kb on + strand, within RR42_RS17685 at 3826.832 kb on + strand, within RR42_RS17685 at 3826.832 kb on + strand, within RR42_RS17685 at 3826.832 kb on + strand, within RR42_RS17685 at 3826.833 kb on - strand, within RR42_RS17685 at 3826.833 kb on - strand, within RR42_RS17685 at 3827.024 kb on + strand, within RR42_RS17685 at 3827.025 kb on - strand, within RR42_RS17685 at 3827.078 kb on - strand, within RR42_RS17685 at 3827.111 kb on + strand, within RR42_RS17685 at 3827.186 kb on + strand, within RR42_RS17685 at 3827.186 kb on + strand, within RR42_RS17685 at 3827.187 kb on - strand, within RR42_RS17685 at 3827.188 kb on + strand, within RR42_RS17685 at 3827.189 kb on - strand, within RR42_RS17685 at 3827.189 kb on - strand, within RR42_RS17685 at 3827.189 kb on - strand, within RR42_RS17685 at 3827.189 kb on - strand, within RR42_RS17685 at 3827.222 kb on + strand, within RR42_RS17685 at 3827.275 kb on + strand at 3827.275 kb on + strand at 3827.316 kb on - strand at 3827.413 kb on - strand at 3827.413 kb on - strand at 3827.413 kb on - strand at 3827.418 kb on + strand at 3827.440 kb on + strand at 3827.440 kb on + strand at 3827.440 kb on + strand at 3827.440 kb on + strand at 3827.445 kb on + strand at 3827.590 kb on + strand, within RR42_RS17690 at 3827.596 kb on + strand, within RR42_RS17690 at 3827.606 kb on + strand, within RR42_RS17690 at 3827.664 kb on + strand, within RR42_RS17690 at 3827.703 kb on + strand, within RR42_RS17690 at 3827.703 kb on + strand, within RR42_RS17690 at 3827.760 kb on + strand, within RR42_RS17690 at 3827.760 kb on + strand, within RR42_RS17690 at 3827.760 kb on + strand, within RR42_RS17690 at 3827.766 kb on + strand, within RR42_RS17690 at 3827.766 kb on + strand, within RR42_RS17690 at 3827.766 kb on + strand, within RR42_RS17690 at 3827.774 kb on + strand, within RR42_RS17690 at 3827.774 kb on + strand, within RR42_RS17690 at 3827.869 kb on + strand, within RR42_RS17690 at 3827.869 kb on + strand, within RR42_RS17690 at 3827.869 kb on + strand, within RR42_RS17690 at 3827.869 kb on + strand, within RR42_RS17690 at 3827.869 kb on + strand, within RR42_RS17690 at 3827.869 kb on + strand, within RR42_RS17690 at 3827.869 kb on + strand, within RR42_RS17690 at 3827.869 kb on + strand, within RR42_RS17690 at 3827.938 kb on + strand at 3827.938 kb on + strand at 3827.938 kb on + strand at 3827.938 kb on + strand at 3827.938 kb on + strand at 3827.938 kb on + strand at 3827.989 kb on + strand at 3827.989 kb on + strand at 3827.989 kb on + strand at 3828.000 kb on + strand at 3828.000 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 3,826,698 + +0.1 3,826,698 + -1.1 3,826,698 + -1.5 3,826,698 + -0.3 3,826,698 + -0.9 3,826,699 - -0.1 3,826,699 - +0.5 3,826,699 - -0.4 3,826,699 - +0.5 3,826,699 - -0.7 3,826,699 - +0.3 3,826,717 + -1.4 3,826,717 + -1.3 3,826,718 - -0.5 3,826,718 - +0.3 3,826,832 + RR42_RS17685 0.18 -1.4 3,826,832 + RR42_RS17685 0.18 +0.3 3,826,832 + RR42_RS17685 0.18 -0.5 3,826,832 + RR42_RS17685 0.18 +0.4 3,826,833 - RR42_RS17685 0.18 +0.3 3,826,833 - RR42_RS17685 0.18 -2.7 3,827,024 + RR42_RS17685 0.53 -1.0 3,827,025 - RR42_RS17685 0.53 +1.6 3,827,078 - RR42_RS17685 0.63 -1.0 3,827,111 + RR42_RS17685 0.69 -1.3 3,827,186 + RR42_RS17685 0.83 +0.5 3,827,186 + RR42_RS17685 0.83 -1.0 3,827,187 - RR42_RS17685 0.83 +0.7 3,827,188 + RR42_RS17685 0.83 -1.0 3,827,189 - RR42_RS17685 0.83 -1.7 3,827,189 - RR42_RS17685 0.83 -0.7 3,827,189 - RR42_RS17685 0.83 -2.6 3,827,189 - RR42_RS17685 0.83 -2.2 3,827,222 + RR42_RS17685 0.89 -1.3 3,827,275 + -1.0 3,827,275 + -2.4 3,827,316 - +0.6 3,827,413 - -0.7 3,827,413 - +0.3 3,827,413 - +0.3 3,827,418 + -0.4 3,827,440 + +0.0 3,827,440 + -2.4 3,827,440 + -0.6 3,827,440 + -0.5 3,827,445 + +0.2 3,827,590 + RR42_RS17690 0.13 -0.3 3,827,596 + RR42_RS17690 0.14 -0.2 3,827,606 + RR42_RS17690 0.16 +0.8 3,827,664 + RR42_RS17690 0.29 -2.9 3,827,703 + RR42_RS17690 0.38 -0.8 3,827,703 + RR42_RS17690 0.38 +0.5 3,827,760 + RR42_RS17690 0.50 -0.5 3,827,760 + RR42_RS17690 0.50 -4.6 3,827,760 + RR42_RS17690 0.50 -0.7 3,827,766 + RR42_RS17690 0.52 -1.7 3,827,766 + RR42_RS17690 0.52 -0.3 3,827,766 + RR42_RS17690 0.52 -0.7 3,827,774 + RR42_RS17690 0.54 -3.3 3,827,774 + RR42_RS17690 0.54 -0.8 3,827,869 + RR42_RS17690 0.75 -1.8 3,827,869 + RR42_RS17690 0.75 -0.9 3,827,869 + RR42_RS17690 0.75 -3.2 3,827,869 + RR42_RS17690 0.75 -1.4 3,827,869 + RR42_RS17690 0.75 -0.2 3,827,869 + RR42_RS17690 0.75 -0.9 3,827,869 + RR42_RS17690 0.75 -2.6 3,827,869 + RR42_RS17690 0.75 -3.3 3,827,938 + -1.7 3,827,938 + -0.2 3,827,938 + -1.5 3,827,938 + -0.8 3,827,938 + -0.9 3,827,938 + -0.2 3,827,989 + +0.0 3,827,989 + -1.4 3,827,989 + -1.1 3,828,000 + -0.9 3,828,000 + +0.4
Or see this region's nucleotide sequence