Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS14900 and RR42_RS14905 are separated by 282 nucleotides RR42_RS14905 and RR42_RS14910 are separated by 119 nucleotides RR42_RS14910 and RR42_RS14915 are separated by 191 nucleotides RR42_RS14915 and RR42_RS14920 are separated by 10 nucleotides
RR42_RS14900: RR42_RS14900 - hypothetical protein, at 3,222,865 to 3,223,284
_RS14900
RR42_RS14905: RR42_RS14905 - hypothetical protein, at 3,223,567 to 3,224,085
_RS14905
RR42_RS14910: RR42_RS14910 - peptidylprolyl isomerase, at 3,224,205 to 3,225,146
_RS14910
RR42_RS14915: RR42_RS14915 - hypothetical protein, at 3,225,338 to 3,226,105
_RS14915
RR42_RS14920: RR42_RS14920 - membrane protein, at 3,226,116 to 3,227,891
_RS14920
Position (kb)
3224
3225
3226 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3223.387 kb on + strand at 3223.387 kb on + strand at 3223.388 kb on - strand at 3223.388 kb on - strand at 3223.393 kb on + strand at 3223.393 kb on + strand at 3223.393 kb on + strand at 3223.394 kb on - strand at 3223.394 kb on - strand at 3223.444 kb on + strand at 3223.445 kb on - strand at 3223.727 kb on + strand, within RR42_RS14905 at 3223.728 kb on - strand, within RR42_RS14905 at 3223.896 kb on - strand, within RR42_RS14905 at 3224.122 kb on + strand at 3224.123 kb on - strand at 3224.284 kb on + strand at 3224.284 kb on + strand at 3224.284 kb on + strand at 3224.710 kb on + strand, within RR42_RS14910 at 3224.711 kb on - strand, within RR42_RS14910 at 3224.711 kb on - strand, within RR42_RS14910 at 3224.711 kb on - strand, within RR42_RS14910 at 3224.832 kb on + strand, within RR42_RS14910 at 3224.833 kb on - strand, within RR42_RS14910 at 3225.471 kb on + strand, within RR42_RS14915 at 3225.471 kb on + strand, within RR42_RS14915 at 3225.471 kb on + strand, within RR42_RS14915 at 3225.472 kb on - strand, within RR42_RS14915 at 3225.723 kb on + strand, within RR42_RS14915
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 3,223,387 + -0.1 3,223,387 + -0.6 3,223,388 - -2.8 3,223,388 - -0.8 3,223,393 + +0.3 3,223,393 + +0.6 3,223,393 + +1.0 3,223,394 - +0.3 3,223,394 - -0.4 3,223,444 + -1.3 3,223,445 - -1.4 3,223,727 + RR42_RS14905 0.31 -0.2 3,223,728 - RR42_RS14905 0.31 -0.0 3,223,896 - RR42_RS14905 0.63 -1.1 3,224,122 + +0.8 3,224,123 - -0.7 3,224,284 + -0.2 3,224,284 + -0.1 3,224,284 + -0.2 3,224,710 + RR42_RS14910 0.54 +0.5 3,224,711 - RR42_RS14910 0.54 +0.7 3,224,711 - RR42_RS14910 0.54 +0.3 3,224,711 - RR42_RS14910 0.54 +0.0 3,224,832 + RR42_RS14910 0.67 -0.0 3,224,833 - RR42_RS14910 0.67 -0.4 3,225,471 + RR42_RS14915 0.17 +0.4 3,225,471 + RR42_RS14915 0.17 +0.6 3,225,471 + RR42_RS14915 0.17 +0.9 3,225,472 - RR42_RS14915 0.17 +1.6 3,225,723 + RR42_RS14915 0.50 +1.2
Or see this region's nucleotide sequence