Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14020
Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Cisplatin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,018,208 | - | -1.0 | |||
3,018,343 | + | RR42_RS14015 | 0.17 | -0.0 | |
3,018,343 | + | RR42_RS14015 | 0.17 | +0.5 | |
3,018,343 | + | RR42_RS14015 | 0.17 | +1.2 | |
3,018,343 | + | RR42_RS14015 | 0.17 | -1.7 | |
3,018,344 | - | RR42_RS14015 | 0.17 | -0.4 | |
3,018,535 | - | RR42_RS14015 | 0.36 | +0.2 | |
3,018,535 | - | RR42_RS14015 | 0.36 | -1.0 | |
3,018,535 | - | RR42_RS14015 | 0.36 | +1.0 | |
3,018,804 | + | RR42_RS14015 | 0.61 | +0.5 | |
3,018,874 | - | RR42_RS14015 | 0.68 | -0.4 | |
3,018,874 | - | RR42_RS14015 | 0.68 | +0.2 | |
3,019,643 | + | -0.1 | |||
3,019,644 | - | +0.3 | |||
3,019,672 | + | -0.1 | |||
3,020,443 | - | -0.5 | |||
3,020,457 | - | +1.3 | |||
3,020,519 | - | -2.7 | |||
3,020,577 | - | RR42_RS14030 | 0.13 | -3.9 | |
3,020,578 | + | RR42_RS14030 | 0.13 | -4.8 | |
3,020,579 | - | RR42_RS14030 | 0.14 | -3.6 |
Or see this region's nucleotide sequence