Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09000

Experiment: R2A with Cisplatin 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Cisplatin 0.001 mg/ml
1,889,475	-				+0.7
1,889,489	+				+0.4
1,889,489	+				-0.3
1,889,489	+				-1.7
1,889,489	+				-2.2
1,889,490	-				-0.3
1,889,490	-				+0.2
1,889,490	-				-0.0
1,889,490	-				+0.7
1,889,569	+				+0.3
1,889,801	+		RR42_RS08995	0.33	-1.1
1,889,801	+		RR42_RS08995	0.33	-0.3
1,889,802	-		RR42_RS08995	0.33	+0.8
1,889,802	-		RR42_RS08995	0.33	-0.8
1,889,884	+		RR42_RS08995	0.50	+0.7
1,890,130	-				+0.4
1,890,171	+				-0.0
1,890,171	+				+0.0
1,890,172	-				-0.9
1,890,232	+				+0.4
1,890,232	+				-0.5
1,890,233	-				-2.6
1,890,233	-				-0.7
1,890,259	-				+0.4
1,890,259	-				-0.5
1,890,269	+				+0.0
1,890,269	+				+0.2
1,890,269	+				+0.4
1,890,269	+				-1.5
1,890,269	+				-1.3
1,890,269	+				+0.6
1,890,269	+				-0.6
1,890,270	-				+0.5
1,890,270	-				-1.4
1,890,270	-				+0.3
1,890,291	+				-0.1
1,890,291	+				+0.2
1,890,291	+				-0.2
1,890,292	-				+0.1
1,890,292	-				+0.1
1,890,292	-				+1.0
1,890,292	-				-1.1
1,890,422	+				-1.0
1,890,422	+				-0.8
1,890,423	-				+0.3
1,890,423	-				-0.1
1,890,430	-				-0.8
1,890,451	+				-0.6
1,890,452	-				-0.0
1,890,452	-				+0.1
1,890,456	+				+1.3
1,890,471	+				-0.1
1,890,471	+				-0.9
1,890,472	-				-1.1
1,890,472	-				-0.2
1,890,518	+		RR42_RS09000	0.22	-0.5
1,890,518	+		RR42_RS09000	0.22	+0.2
1,890,518	+		RR42_RS09000	0.22	-0.4
1,890,519	-		RR42_RS09000	0.22	-1.8
1,890,519	-		RR42_RS09000	0.22	-1.1
1,890,519	-		RR42_RS09000	0.22	-0.4
1,890,575	+		RR42_RS09000	0.44	-0.8
1,890,576	-		RR42_RS09000	0.45	-0.1
1,890,576	-		RR42_RS09000	0.45	-1.0
1,890,676	+		RR42_RS09000	0.85	+0.5
1,890,700	+				+0.3
1,890,700	+				-0.5
1,890,700	+				-1.7
1,890,700	+				-0.1
1,890,701	-				-0.5
1,890,701	-				-1.7
1,890,701	-				-0.5
1,890,701	-				+0.8
1,890,701	-				-0.5
1,890,724	+				+0.2
1,890,725	-				+0.9
1,890,788	+				+0.9
1,890,788	+				-0.9
1,890,788	+				+1.3
1,890,788	+				+0.1
1,890,788	+				+0.3
1,890,789	-				-0.4
1,890,789	-				-0.6
1,890,789	-				+0.0
1,891,094	+		RR42_RS09005	0.31	-1.2
1,891,094	+		RR42_RS09005	0.31	-0.8
1,891,094	+		RR42_RS09005	0.31	-0.4
1,891,094	+		RR42_RS09005	0.31	+0.8
1,891,095	-		RR42_RS09005	0.31	-0.4
1,891,095	-		RR42_RS09005	0.31	+0.7
1,891,141	+		RR42_RS09005	0.37	-0.8
1,891,151	+		RR42_RS09005	0.38	-0.4
1,891,152	-		RR42_RS09005	0.38	+0.0
1,891,152	-		RR42_RS09005	0.38	-1.2
1,891,169	+		RR42_RS09005	0.40	+0.2
1,891,169	+		RR42_RS09005	0.40	-0.3
1,891,170	-		RR42_RS09005	0.40	+0.6
1,891,170	-		RR42_RS09005	0.40	+0.1
1,891,170	-		RR42_RS09005	0.40	+0.7
1,891,251	-		RR42_RS09005	0.50	-0.5
1,891,251	-		RR42_RS09005	0.50	-0.9
1,891,251	-		RR42_RS09005	0.50	+0.6
1,891,430	+		RR42_RS09005	0.70	-0.8
1,891,542	-		RR42_RS09005	0.83	+1.4
1,891,542	-		RR42_RS09005	0.83	-0.0
1,891,572	-		RR42_RS09005	0.87	+0.2
1,891,572	-		RR42_RS09005	0.87	-1.0