Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08320
Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Cisplatin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,760,676 | - | RR42_RS08315 | 0.53 | +0.8 | |
1,760,831 | + | RR42_RS08315 | 0.61 | +0.5 | |
1,760,889 | + | RR42_RS08315 | 0.64 | +1.4 | |
1,760,891 | + | RR42_RS08315 | 0.64 | +0.3 | |
1,761,318 | + | RR42_RS08315 | 0.86 | -1.3 | |
1,761,318 | + | RR42_RS08315 | 0.86 | +0.3 | |
1,761,318 | + | RR42_RS08315 | 0.86 | -0.1 | |
1,761,319 | - | RR42_RS08315 | 0.86 | +3.0 | |
1,761,507 | - | +0.6 | |||
1,761,599 | + | +0.4 | |||
1,761,676 | + | +0.4 | |||
1,761,676 | + | +0.5 | |||
1,761,862 | - | RR42_RS08320 | 0.28 | -0.1 | |
1,762,098 | - | RR42_RS08320 | 0.52 | +0.9 | |
1,762,148 | + | RR42_RS08320 | 0.58 | +1.0 | |
1,762,671 | + | +0.5 | |||
1,763,035 | - | RR42_RS08325 | 0.42 | +1.9 | |
1,763,037 | + | RR42_RS08325 | 0.42 | -0.5 | |
1,763,145 | + | RR42_RS08325 | 0.52 | +1.1 | |
1,763,146 | - | RR42_RS08325 | 0.52 | +1.2 | |
1,763,196 | + | RR42_RS08325 | 0.56 | -0.4 | |
1,763,196 | + | RR42_RS08325 | 0.56 | +0.7 | |
1,763,317 | - | RR42_RS08325 | 0.67 | -0.9 | |
1,763,464 | - | RR42_RS08325 | 0.80 | +0.4 | |
1,763,464 | - | RR42_RS08325 | 0.80 | +0.0 |
Or see this region's nucleotide sequence