Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08300 and RR42_RS08305 are separated by 178 nucleotides RR42_RS08305 and RR42_RS08310 overlap by 14 nucleotides RR42_RS08310 and RR42_RS08315 are separated by 48 nucleotides
RR42_RS08300: RR42_RS08300 - hypothetical protein, at 1,758,321 to 1,758,701
_RS08300
RR42_RS08305: RR42_RS08305 - phage protein, HK97 gp10 family, at 1,758,880 to 1,759,359
_RS08305
RR42_RS08310: RR42_RS08310 - hypothetical protein, at 1,759,346 to 1,759,603
_RS08310
RR42_RS08315: RR42_RS08315 - hypothetical protein, at 1,759,652 to 1,761,589
_RS08315
Position (kb)
1759
1760 Strain fitness (log2 ratio)
-1
0
1 at 1758.507 kb on - strand, within RR42_RS08300 at 1758.594 kb on + strand, within RR42_RS08300 at 1758.594 kb on + strand, within RR42_RS08300 at 1758.594 kb on + strand, within RR42_RS08300 at 1758.598 kb on + strand, within RR42_RS08300 at 1758.598 kb on + strand, within RR42_RS08300 at 1758.727 kb on - strand at 1758.817 kb on + strand at 1759.383 kb on + strand, within RR42_RS08310 at 1759.384 kb on - strand, within RR42_RS08310 at 1759.398 kb on + strand, within RR42_RS08310 at 1759.398 kb on + strand, within RR42_RS08310 at 1759.398 kb on + strand, within RR42_RS08310 at 1759.399 kb on - strand, within RR42_RS08310 at 1759.417 kb on + strand, within RR42_RS08310 at 1759.417 kb on + strand, within RR42_RS08310 at 1759.637 kb on + strand at 1759.638 kb on - strand at 1759.639 kb on + strand at 1759.639 kb on + strand at 1759.639 kb on + strand at 1759.665 kb on - strand at 1759.702 kb on + strand at 1759.703 kb on - strand at 1759.836 kb on + strand at 1759.890 kb on + strand, within RR42_RS08315 at 1759.890 kb on + strand, within RR42_RS08315 at 1759.891 kb on - strand, within RR42_RS08315 at 1760.201 kb on + strand, within RR42_RS08315 at 1760.201 kb on + strand, within RR42_RS08315 at 1760.202 kb on - strand, within RR42_RS08315 at 1760.202 kb on - strand, within RR42_RS08315 at 1760.202 kb on - strand, within RR42_RS08315 at 1760.219 kb on + strand, within RR42_RS08315 at 1760.220 kb on - strand, within RR42_RS08315 at 1760.390 kb on + strand, within RR42_RS08315 at 1760.467 kb on + strand, within RR42_RS08315 at 1760.468 kb on - strand, within RR42_RS08315 at 1760.468 kb on - strand, within RR42_RS08315
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 1,758,507 - RR42_RS08300 0.49 -0.5 1,758,594 + RR42_RS08300 0.72 +0.3 1,758,594 + RR42_RS08300 0.72 +0.8 1,758,594 + RR42_RS08300 0.72 +0.4 1,758,598 + RR42_RS08300 0.73 +0.5 1,758,598 + RR42_RS08300 0.73 +0.7 1,758,727 - +0.8 1,758,817 + +0.7 1,759,383 + RR42_RS08310 0.14 +0.2 1,759,384 - RR42_RS08310 0.15 +0.8 1,759,398 + RR42_RS08310 0.20 +0.1 1,759,398 + RR42_RS08310 0.20 -0.2 1,759,398 + RR42_RS08310 0.20 +0.4 1,759,399 - RR42_RS08310 0.21 +0.6 1,759,417 + RR42_RS08310 0.28 +1.4 1,759,417 + RR42_RS08310 0.28 +1.0 1,759,637 + +0.7 1,759,638 - -0.3 1,759,639 + +0.3 1,759,639 + -0.0 1,759,639 + -0.9 1,759,665 - -1.3 1,759,702 + +0.7 1,759,703 - -0.0 1,759,836 + +1.1 1,759,890 + RR42_RS08315 0.12 +0.2 1,759,890 + RR42_RS08315 0.12 +0.7 1,759,891 - RR42_RS08315 0.12 +1.5 1,760,201 + RR42_RS08315 0.28 +0.4 1,760,201 + RR42_RS08315 0.28 +1.4 1,760,202 - RR42_RS08315 0.28 +0.4 1,760,202 - RR42_RS08315 0.28 +0.8 1,760,202 - RR42_RS08315 0.28 +1.5 1,760,219 + RR42_RS08315 0.29 -0.4 1,760,220 - RR42_RS08315 0.29 +1.5 1,760,390 + RR42_RS08315 0.38 +0.4 1,760,467 + RR42_RS08315 0.42 +0.3 1,760,468 - RR42_RS08315 0.42 -0.3 1,760,468 - RR42_RS08315 0.42 +1.5
Or see this region's nucleotide sequence