Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02570

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02565 and RR42_RS02570 are separated by 177 nucleotidesRR42_RS02570 and RR42_RS02575 are separated by 364 nucleotides RR42_RS02565: RR42_RS02565 - LysR family transcriptional regulator, at 576,333 to 577,304 _RS02565 RR42_RS02570: RR42_RS02570 - glutamate dehydrogenase, at 577,482 to 578,789 _RS02570 RR42_RS02575: RR42_RS02575 - ABC transporter, at 579,154 to 580,053 _RS02575 Position (kb) 577 578 579Strain fitness (log2 ratio) -3 -2 -1 0 1at 576.526 kb on - strand, within RR42_RS02565at 576.526 kb on - strand, within RR42_RS02565at 576.772 kb on - strand, within RR42_RS02565at 576.772 kb on - strand, within RR42_RS02565at 576.792 kb on - strand, within RR42_RS02565at 576.813 kb on + strand, within RR42_RS02565at 576.852 kb on + strand, within RR42_RS02565at 576.852 kb on + strand, within RR42_RS02565at 576.886 kb on - strand, within RR42_RS02565at 576.930 kb on + strand, within RR42_RS02565at 576.930 kb on + strand, within RR42_RS02565at 576.930 kb on + strand, within RR42_RS02565at 576.931 kb on - strand, within RR42_RS02565at 576.931 kb on - strand, within RR42_RS02565at 576.932 kb on + strand, within RR42_RS02565at 576.932 kb on + strand, within RR42_RS02565at 576.933 kb on - strand, within RR42_RS02565at 577.012 kb on - strand, within RR42_RS02565at 577.340 kb on + strandat 577.341 kb on - strandat 577.341 kb on - strandat 577.572 kb on + strandat 577.573 kb on - strandat 577.846 kb on - strand, within RR42_RS02570at 577.846 kb on - strand, within RR42_RS02570at 577.865 kb on + strand, within RR42_RS02570at 577.923 kb on + strand, within RR42_RS02570at 577.924 kb on - strand, within RR42_RS02570at 577.924 kb on - strand, within RR42_RS02570at 577.924 kb on - strand, within RR42_RS02570at 577.924 kb on - strand, within RR42_RS02570at 577.925 kb on + strand, within RR42_RS02570at 577.925 kb on + strand, within RR42_RS02570at 577.926 kb on - strand, within RR42_RS02570at 578.022 kb on + strand, within RR42_RS02570at 578.022 kb on + strand, within RR42_RS02570at 578.023 kb on - strand, within RR42_RS02570at 578.023 kb on - strand, within RR42_RS02570at 578.023 kb on - strand, within RR42_RS02570at 578.283 kb on + strand, within RR42_RS02570at 578.283 kb on + strand, within RR42_RS02570at 578.322 kb on + strand, within RR42_RS02570at 578.322 kb on + strand, within RR42_RS02570at 578.322 kb on + strand, within RR42_RS02570at 578.323 kb on - strand, within RR42_RS02570at 578.323 kb on - strand, within RR42_RS02570at 578.323 kb on - strand, within RR42_RS02570at 578.535 kb on - strand, within RR42_RS02570at 578.586 kb on + strand, within RR42_RS02570at 578.599 kb on + strand, within RR42_RS02570at 578.600 kb on - strand, within RR42_RS02570at 578.712 kb on - strandat 578.850 kb on + strandat 578.901 kb on + strandat 578.901 kb on + strandat 578.902 kb on - strandat 579.091 kb on - strandat 579.091 kb on - strandat 579.091 kb on - strandat 579.153 kb on + strandat 579.154 kb on - strandat 579.154 kb on - strandat 579.154 kb on - strandat 579.271 kb on - strand, within RR42_RS02575at 579.271 kb on - strand, within RR42_RS02575at 579.271 kb on - strand, within RR42_RS02575at 579.307 kb on + strand, within RR42_RS02575at 579.307 kb on + strand, within RR42_RS02575at 579.308 kb on - strand, within RR42_RS02575at 579.308 kb on - strand, within RR42_RS02575at 579.343 kb on + strand, within RR42_RS02575at 579.344 kb on - strand, within RR42_RS02575at 579.344 kb on - strand, within RR42_RS02575

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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576,526 - RR42_RS02565 0.20 -2.4
576,526 - RR42_RS02565 0.20 -0.7
576,772 - RR42_RS02565 0.45 -1.5
576,772 - RR42_RS02565 0.45 -2.1
576,792 - RR42_RS02565 0.47 -2.1
576,813 + RR42_RS02565 0.49 -0.0
576,852 + RR42_RS02565 0.53 -0.5
576,852 + RR42_RS02565 0.53 +0.7
576,886 - RR42_RS02565 0.57 -1.0
576,930 + RR42_RS02565 0.61 +1.3
576,930 + RR42_RS02565 0.61 +0.9
576,930 + RR42_RS02565 0.61 -0.1
576,931 - RR42_RS02565 0.62 -0.2
576,931 - RR42_RS02565 0.62 -0.2
576,932 + RR42_RS02565 0.62 -3.7
576,932 + RR42_RS02565 0.62 +0.7
576,933 - RR42_RS02565 0.62 -1.1
577,012 - RR42_RS02565 0.70 -0.4
577,340 + +0.4
577,341 - +0.6
577,341 - +0.2
577,572 + +0.6
577,573 - -0.3
577,846 - RR42_RS02570 0.28 +0.8
577,846 - RR42_RS02570 0.28 -0.9
577,865 + RR42_RS02570 0.29 -0.4
577,923 + RR42_RS02570 0.34 -2.2
577,924 - RR42_RS02570 0.34 +0.1
577,924 - RR42_RS02570 0.34 +0.6
577,924 - RR42_RS02570 0.34 -2.6
577,924 - RR42_RS02570 0.34 +1.0
577,925 + RR42_RS02570 0.34 -0.3
577,925 + RR42_RS02570 0.34 -1.3
577,926 - RR42_RS02570 0.34 -0.8
578,022 + RR42_RS02570 0.41 -0.3
578,022 + RR42_RS02570 0.41 +0.7
578,023 - RR42_RS02570 0.41 +0.4
578,023 - RR42_RS02570 0.41 -0.9
578,023 - RR42_RS02570 0.41 +1.1
578,283 + RR42_RS02570 0.61 +1.0
578,283 + RR42_RS02570 0.61 +0.4
578,322 + RR42_RS02570 0.64 -0.9
578,322 + RR42_RS02570 0.64 -0.1
578,322 + RR42_RS02570 0.64 +0.6
578,323 - RR42_RS02570 0.64 -0.2
578,323 - RR42_RS02570 0.64 -0.8
578,323 - RR42_RS02570 0.64 -1.0
578,535 - RR42_RS02570 0.81 -1.1
578,586 + RR42_RS02570 0.84 +0.1
578,599 + RR42_RS02570 0.85 -0.1
578,600 - RR42_RS02570 0.85 +0.3
578,712 - -1.6
578,850 + -0.3
578,901 + +0.2
578,901 + -0.5
578,902 - -1.5
579,091 - -0.7
579,091 - +0.6
579,091 - +1.2
579,153 + -2.6
579,154 - -1.2
579,154 - -1.2
579,154 - -0.3
579,271 - RR42_RS02575 0.13 +0.4
579,271 - RR42_RS02575 0.13 +0.8
579,271 - RR42_RS02575 0.13 -0.3
579,307 + RR42_RS02575 0.17 +0.9
579,307 + RR42_RS02575 0.17 +0.4
579,308 - RR42_RS02575 0.17 +0.2
579,308 - RR42_RS02575 0.17 -1.6
579,343 + RR42_RS02575 0.21 +0.2
579,344 - RR42_RS02575 0.21 +0.0
579,344 - RR42_RS02575 0.21 -0.5

Or see this region's nucleotide sequence