Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02140

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02130 and RR42_RS02135 are separated by 28 nucleotidesRR42_RS02135 and RR42_RS02140 are separated by 111 nucleotidesRR42_RS02140 and RR42_RS02145 are separated by 5 nucleotides RR42_RS02130: RR42_RS02130 - membrane protein, at 472,170 to 473,855 _RS02130 RR42_RS02135: RR42_RS02135 - membrane protein, at 473,884 to 474,369 _RS02135 RR42_RS02140: RR42_RS02140 - hypothetical protein, at 474,481 to 474,831 _RS02140 RR42_RS02145: RR42_RS02145 - excinuclease ABC subunit A, at 474,837 to 477,701 _RS02145 Position (kb) 474 475Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 473.631 kb on + strand, within RR42_RS02130at 473.632 kb on - strand, within RR42_RS02130at 473.639 kb on + strand, within RR42_RS02130at 473.640 kb on - strand, within RR42_RS02130at 473.754 kb on + strandat 473.784 kb on - strandat 473.865 kb on - strandat 473.885 kb on + strandat 473.885 kb on + strandat 473.885 kb on + strandat 473.887 kb on + strandat 473.887 kb on + strandat 473.887 kb on + strandat 473.887 kb on + strandat 473.888 kb on - strandat 473.888 kb on - strandat 473.888 kb on - strandat 473.888 kb on - strandat 473.895 kb on - strandat 474.010 kb on + strand, within RR42_RS02135at 474.010 kb on + strand, within RR42_RS02135at 474.011 kb on - strand, within RR42_RS02135at 474.011 kb on - strand, within RR42_RS02135at 474.011 kb on - strand, within RR42_RS02135at 474.055 kb on + strand, within RR42_RS02135at 474.056 kb on - strand, within RR42_RS02135at 474.235 kb on + strand, within RR42_RS02135at 474.236 kb on - strand, within RR42_RS02135at 474.355 kb on + strandat 474.355 kb on + strandat 474.356 kb on - strandat 474.438 kb on + strandat 474.438 kb on + strandat 474.438 kb on + strandat 474.438 kb on + strandat 474.438 kb on + strandat 474.439 kb on - strandat 474.439 kb on - strandat 474.439 kb on - strandat 474.439 kb on - strandat 474.439 kb on - strandat 474.443 kb on + strandat 474.444 kb on - strandat 474.483 kb on - strandat 474.611 kb on - strand, within RR42_RS02140at 474.849 kb on + strandat 474.850 kb on - strandat 474.850 kb on - strandat 474.924 kb on + strandat 475.108 kb on + strandat 475.108 kb on + strandat 475.108 kb on + strandat 475.109 kb on - strandat 475.109 kb on - strandat 475.209 kb on - strand, within RR42_RS02145at 475.210 kb on + strand, within RR42_RS02145at 475.210 kb on + strand, within RR42_RS02145at 475.210 kb on + strand, within RR42_RS02145at 475.211 kb on - strand, within RR42_RS02145at 475.330 kb on + strand, within RR42_RS02145at 475.358 kb on - strand, within RR42_RS02145at 475.358 kb on - strand, within RR42_RS02145at 475.390 kb on + strand, within RR42_RS02145at 475.390 kb on + strand, within RR42_RS02145at 475.391 kb on - strand, within RR42_RS02145at 475.391 kb on - strand, within RR42_RS02145at 475.558 kb on + strand, within RR42_RS02145at 475.558 kb on + strand, within RR42_RS02145at 475.558 kb on + strand, within RR42_RS02145at 475.562 kb on + strand, within RR42_RS02145at 475.563 kb on - strand, within RR42_RS02145at 475.678 kb on + strand, within RR42_RS02145at 475.679 kb on - strand, within RR42_RS02145at 475.679 kb on - strand, within RR42_RS02145at 475.702 kb on + strand, within RR42_RS02145at 475.703 kb on - strand, within RR42_RS02145

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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473,631 + RR42_RS02130 0.87 -0.1
473,632 - RR42_RS02130 0.87 +0.1
473,639 + RR42_RS02130 0.87 +0.5
473,640 - RR42_RS02130 0.87 +0.0
473,754 + +0.1
473,784 - +0.5
473,865 - +0.5
473,885 + -0.2
473,885 + +0.3
473,885 + +1.0
473,887 + -0.3
473,887 + -0.5
473,887 + -0.5
473,887 + -1.6
473,888 - +0.5
473,888 - +0.1
473,888 - -1.2
473,888 - -0.9
473,895 - -1.4
474,010 + RR42_RS02135 0.26 +0.2
474,010 + RR42_RS02135 0.26 +0.4
474,011 - RR42_RS02135 0.26 -2.2
474,011 - RR42_RS02135 0.26 -0.8
474,011 - RR42_RS02135 0.26 +0.1
474,055 + RR42_RS02135 0.35 -0.5
474,056 - RR42_RS02135 0.35 +0.1
474,235 + RR42_RS02135 0.72 +0.0
474,236 - RR42_RS02135 0.72 +0.4
474,355 + -0.4
474,355 + +0.0
474,356 - +0.1
474,438 + +0.1
474,438 + -3.1
474,438 + +0.0
474,438 + -0.2
474,438 + +0.5
474,439 - -0.8
474,439 - -1.7
474,439 - -0.3
474,439 - -0.4
474,439 - -0.4
474,443 + +0.8
474,444 - +0.6
474,483 - +0.0
474,611 - RR42_RS02140 0.37 -1.2
474,849 + -1.4
474,850 - +1.1
474,850 - +0.3
474,924 + -0.8
475,108 + -4.5
475,108 + -0.9
475,108 + -3.8
475,109 - -3.9
475,109 - -1.8
475,209 - RR42_RS02145 0.13 -2.6
475,210 + RR42_RS02145 0.13 -4.1
475,210 + RR42_RS02145 0.13 -3.4
475,210 + RR42_RS02145 0.13 -4.0
475,211 - RR42_RS02145 0.13 -1.9
475,330 + RR42_RS02145 0.17 -2.4
475,358 - RR42_RS02145 0.18 -1.8
475,358 - RR42_RS02145 0.18 -3.0
475,390 + RR42_RS02145 0.19 -4.4
475,390 + RR42_RS02145 0.19 -4.7
475,391 - RR42_RS02145 0.19 -3.1
475,391 - RR42_RS02145 0.19 -1.6
475,558 + RR42_RS02145 0.25 -2.0
475,558 + RR42_RS02145 0.25 -3.7
475,558 + RR42_RS02145 0.25 -3.3
475,562 + RR42_RS02145 0.25 -3.7
475,563 - RR42_RS02145 0.25 -2.6
475,678 + RR42_RS02145 0.29 -4.5
475,679 - RR42_RS02145 0.29 -3.3
475,679 - RR42_RS02145 0.29 -2.5
475,702 + RR42_RS02145 0.30 -2.7
475,703 - RR42_RS02145 0.30 -3.3

Or see this region's nucleotide sequence