Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00885 and RR42_RS00890 are separated by 84 nucleotides RR42_RS00890 and RR42_RS00895 are separated by 48 nucleotides
RR42_RS00885: RR42_RS00885 - acetyl-CoA acetyltransferase, at 213,807 to 215,003
_RS00885
RR42_RS00890: RR42_RS00890 - short-chain dehydrogenase, at 215,088 to 215,768
_RS00890
RR42_RS00895: RR42_RS00895 - acyl-CoA dehydrogenase, at 215,817 to 216,947
_RS00895
Position (kb) 215
216 Strain fitness (log2 ratio) -2
-1
0
1
2 at 214.263 kb on + strand, within RR42_RS00885 at 214.264 kb on - strand, within RR42_RS00885 at 214.264 kb on - strand, within RR42_RS00885 at 214.329 kb on + strand, within RR42_RS00885 at 214.329 kb on + strand, within RR42_RS00885 at 214.329 kb on + strand, within RR42_RS00885 at 214.329 kb on + strand, within RR42_RS00885 at 214.329 kb on + strand, within RR42_RS00885 at 214.329 kb on + strand, within RR42_RS00885 at 214.338 kb on - strand, within RR42_RS00885 at 215.067 kb on + strand at 215.305 kb on + strand, within RR42_RS00890 at 215.306 kb on - strand, within RR42_RS00890 at 215.306 kb on - strand, within RR42_RS00890 at 215.313 kb on + strand, within RR42_RS00890 at 215.313 kb on + strand, within RR42_RS00890 at 215.313 kb on + strand, within RR42_RS00890 at 215.742 kb on + strand at 215.742 kb on + strand at 215.742 kb on + strand at 215.742 kb on + strand at 215.742 kb on + strand at 215.742 kb on + strand at 215.743 kb on - strand at 215.743 kb on - strand at 215.743 kb on - strand at 215.743 kb on - strand at 215.743 kb on - strand at 215.961 kb on + strand, within RR42_RS00895 at 215.985 kb on + strand, within RR42_RS00895 at 216.007 kb on - strand, within RR42_RS00895 at 216.253 kb on - strand, within RR42_RS00895 at 216.479 kb on + strand, within RR42_RS00895 at 216.480 kb on - strand, within RR42_RS00895 at 216.480 kb on - strand, within RR42_RS00895 at 216.480 kb on - strand, within RR42_RS00895 at 216.504 kb on + strand, within RR42_RS00895 at 216.600 kb on + strand, within RR42_RS00895 at 216.600 kb on + strand, within RR42_RS00895 at 216.600 kb on + strand, within RR42_RS00895
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 214,263 + RR42_RS00885 0.38 +1.4 214,264 - RR42_RS00885 0.38 +0.5 214,264 - RR42_RS00885 0.38 +0.6 214,329 + RR42_RS00885 0.44 -0.4 214,329 + RR42_RS00885 0.44 -1.1 214,329 + RR42_RS00885 0.44 +0.9 214,329 + RR42_RS00885 0.44 +1.3 214,329 + RR42_RS00885 0.44 +1.0 214,329 + RR42_RS00885 0.44 -0.1 214,338 - RR42_RS00885 0.44 +0.4 215,067 + -0.1 215,305 + RR42_RS00890 0.32 +0.0 215,306 - RR42_RS00890 0.32 +0.3 215,306 - RR42_RS00890 0.32 +0.5 215,313 + RR42_RS00890 0.33 -0.3 215,313 + RR42_RS00890 0.33 +0.2 215,313 + RR42_RS00890 0.33 +0.6 215,742 + +0.3 215,742 + +1.2 215,742 + -1.9 215,742 + +0.4 215,742 + -0.4 215,742 + +1.2 215,743 - +0.2 215,743 - -1.1 215,743 - +0.2 215,743 - +0.4 215,743 - +2.3 215,961 + RR42_RS00895 0.13 -0.8 215,985 + RR42_RS00895 0.15 -0.5 216,007 - RR42_RS00895 0.17 +0.1 216,253 - RR42_RS00895 0.39 +0.3 216,479 + RR42_RS00895 0.59 +0.1 216,480 - RR42_RS00895 0.59 -0.3 216,480 - RR42_RS00895 0.59 +0.7 216,480 - RR42_RS00895 0.59 +0.1 216,504 + RR42_RS00895 0.61 +0.3 216,600 + RR42_RS00895 0.69 +0.2 216,600 + RR42_RS00895 0.69 -2.3 216,600 + RR42_RS00895 0.69 -0.2
Or see this region's nucleotide sequence