Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_595

Experiment: dimethyl sulfone 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_593 and Pf6N2E2_594 are separated by 203 nucleotidesPf6N2E2_594 and Pf6N2E2_595 are separated by 197 nucleotidesPf6N2E2_595 and Pf6N2E2_596 are separated by 37 nucleotides Pf6N2E2_593 - FIG00958166: hypothetical protein, at 670,006 to 670,269 _593 Pf6N2E2_594 - FMN reductase, NADPH-dependent, at 670,473 to 671,012 _594 Pf6N2E2_595 - Arsenical resistance operon repressor, at 671,210 to 671,560 _595 Pf6N2E2_596 - Arsenic efflux pump protein, at 671,598 to 672,881 _596 Position (kb) 671 672Strain fitness (log2 ratio) -2 -1 0 1 2 3at 670.259 kb on - strandat 670.275 kb on - strandat 670.343 kb on + strandat 670.344 kb on - strandat 670.412 kb on + strandat 670.412 kb on + strandat 670.412 kb on + strandat 670.412 kb on + strandat 670.412 kb on + strandat 670.412 kb on + strandat 670.413 kb on - strandat 670.413 kb on - strandat 670.414 kb on + strandat 670.414 kb on + strandat 670.415 kb on - strandat 670.415 kb on - strandat 670.415 kb on - strandat 670.418 kb on + strandat 670.418 kb on + strandat 670.418 kb on + strandat 670.418 kb on + strandat 670.418 kb on + strandat 670.419 kb on - strandat 670.460 kb on + strandat 670.460 kb on + strandat 670.460 kb on + strandat 670.461 kb on - strandat 670.461 kb on - strandat 670.461 kb on - strandat 670.467 kb on + strandat 670.596 kb on + strand, within Pf6N2E2_594at 670.597 kb on - strand, within Pf6N2E2_594at 670.597 kb on - strand, within Pf6N2E2_594at 670.597 kb on - strand, within Pf6N2E2_594at 670.597 kb on - strand, within Pf6N2E2_594at 670.597 kb on - strand, within Pf6N2E2_594at 670.598 kb on + strand, within Pf6N2E2_594at 670.598 kb on + strand, within Pf6N2E2_594at 670.599 kb on - strand, within Pf6N2E2_594at 670.615 kb on + strand, within Pf6N2E2_594at 670.615 kb on + strand, within Pf6N2E2_594at 670.615 kb on + strand, within Pf6N2E2_594at 670.615 kb on + strand, within Pf6N2E2_594at 670.632 kb on + strand, within Pf6N2E2_594at 670.632 kb on + strand, within Pf6N2E2_594at 670.632 kb on + strand, within Pf6N2E2_594at 670.692 kb on + strand, within Pf6N2E2_594at 670.692 kb on + strand, within Pf6N2E2_594at 670.692 kb on + strand, within Pf6N2E2_594at 670.692 kb on + strand, within Pf6N2E2_594at 670.693 kb on - strand, within Pf6N2E2_594at 670.968 kb on - strandat 670.968 kb on - strandat 671.031 kb on - strandat 671.173 kb on - strandat 671.174 kb on + strandat 671.175 kb on - strandat 671.175 kb on - strandat 671.188 kb on + strandat 671.206 kb on - strandat 671.206 kb on - strandat 671.420 kb on + strand, within Pf6N2E2_595at 671.420 kb on + strand, within Pf6N2E2_595at 671.424 kb on - strand, within Pf6N2E2_595at 671.424 kb on - strand, within Pf6N2E2_595at 671.633 kb on + strandat 671.633 kb on + strandat 671.633 kb on + strandat 671.753 kb on + strand, within Pf6N2E2_596at 671.771 kb on + strand, within Pf6N2E2_596at 671.771 kb on + strand, within Pf6N2E2_596at 671.772 kb on - strand, within Pf6N2E2_596at 671.888 kb on + strand, within Pf6N2E2_596at 671.888 kb on + strand, within Pf6N2E2_596at 671.888 kb on + strand, within Pf6N2E2_596at 672.271 kb on - strand, within Pf6N2E2_596at 672.465 kb on + strand, within Pf6N2E2_596at 672.465 kb on + strand, within Pf6N2E2_596at 672.465 kb on + strand, within Pf6N2E2_596at 672.477 kb on + strand, within Pf6N2E2_596at 672.507 kb on + strand, within Pf6N2E2_596

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Per-strain Table

Position Strand Gene LocusTag Fraction dimethyl sulfone 0.25 M
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670,259 - +1.0
670,275 - +2.4
670,343 + +1.7
670,344 - +0.8
670,412 + +0.6
670,412 + +0.4
670,412 + -0.6
670,412 + -0.2
670,412 + +0.6
670,412 + +3.4
670,413 - -0.6
670,413 - -0.2
670,414 + -0.5
670,414 + +0.2
670,415 - -2.2
670,415 - -1.6
670,415 - -0.3
670,418 + +0.0
670,418 + +0.9
670,418 + +1.1
670,418 + -0.6
670,418 + +0.8
670,419 - -0.8
670,460 + +1.0
670,460 + +0.9
670,460 + +0.9
670,461 - -0.5
670,461 - -1.8
670,461 - -1.2
670,467 + -0.1
670,596 + Pf6N2E2_594 0.23 -1.2
670,597 - Pf6N2E2_594 0.23 +2.4
670,597 - Pf6N2E2_594 0.23 +1.7
670,597 - Pf6N2E2_594 0.23 -0.6
670,597 - Pf6N2E2_594 0.23 -1.8
670,597 - Pf6N2E2_594 0.23 +0.4
670,598 + Pf6N2E2_594 0.23 -0.3
670,598 + Pf6N2E2_594 0.23 +1.6
670,599 - Pf6N2E2_594 0.23 +0.2
670,615 + Pf6N2E2_594 0.26 +0.4
670,615 + Pf6N2E2_594 0.26 +0.4
670,615 + Pf6N2E2_594 0.26 +0.2
670,615 + Pf6N2E2_594 0.26 -0.9
670,632 + Pf6N2E2_594 0.29 +1.9
670,632 + Pf6N2E2_594 0.29 +1.9
670,632 + Pf6N2E2_594 0.29 -0.8
670,692 + Pf6N2E2_594 0.41 -0.1
670,692 + Pf6N2E2_594 0.41 +0.6
670,692 + Pf6N2E2_594 0.41 +0.4
670,692 + Pf6N2E2_594 0.41 +0.7
670,693 - Pf6N2E2_594 0.41 +0.8
670,968 - +1.4
670,968 - -0.2
671,031 - +1.0
671,173 - -1.3
671,174 + -0.2
671,175 - -0.6
671,175 - -1.6
671,188 + +1.9
671,206 - -0.1
671,206 - -1.7
671,420 + Pf6N2E2_595 0.60 +1.4
671,420 + Pf6N2E2_595 0.60 -0.6
671,424 - Pf6N2E2_595 0.61 +0.7
671,424 - Pf6N2E2_595 0.61 +2.1
671,633 + +1.0
671,633 + -0.5
671,633 + +0.0
671,753 + Pf6N2E2_596 0.12 -0.7
671,771 + Pf6N2E2_596 0.13 -1.8
671,771 + Pf6N2E2_596 0.13 -0.0
671,772 - Pf6N2E2_596 0.14 -0.9
671,888 + Pf6N2E2_596 0.23 +0.1
671,888 + Pf6N2E2_596 0.23 +0.8
671,888 + Pf6N2E2_596 0.23 -0.4
672,271 - Pf6N2E2_596 0.52 -1.4
672,465 + Pf6N2E2_596 0.68 -0.8
672,465 + Pf6N2E2_596 0.68 -0.2
672,465 + Pf6N2E2_596 0.68 -0.2
672,477 + Pf6N2E2_596 0.68 +2.4
672,507 + Pf6N2E2_596 0.71 -1.8

Or see this region's nucleotide sequence