Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5039

Experiment: dimethyl sulfone 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5038 and Pf6N2E2_5039 are separated by 39 nucleotidesPf6N2E2_5039 and Pf6N2E2_5040 are separated by 90 nucleotidesPf6N2E2_5040 and Pf6N2E2_5041 are separated by 174 nucleotides Pf6N2E2_5038 - ATP-dependent helicase HrpB, at 5,813,357 to 5,815,873 _5038 Pf6N2E2_5039 - endonuclease/exonuclease/phosphatase family protein, at 5,815,913 to 5,816,992 _5039 Pf6N2E2_5040 - FIG00958173: hypothetical protein, at 5,817,083 to 5,817,745 _5040 Pf6N2E2_5041 - Uncharacterized protein conserved in bacteria, at 5,817,920 to 5,818,669 _5041 Position (kb) 5815 5816 5817Strain fitness (log2 ratio) -2 -1 0 1 2at 5814.962 kb on + strand, within Pf6N2E2_5038at 5815.079 kb on + strand, within Pf6N2E2_5038at 5815.079 kb on + strand, within Pf6N2E2_5038at 5815.079 kb on + strand, within Pf6N2E2_5038at 5815.079 kb on + strand, within Pf6N2E2_5038at 5815.080 kb on - strand, within Pf6N2E2_5038at 5815.080 kb on - strand, within Pf6N2E2_5038at 5815.138 kb on + strand, within Pf6N2E2_5038at 5815.138 kb on + strand, within Pf6N2E2_5038at 5815.139 kb on - strand, within Pf6N2E2_5038at 5815.139 kb on - strand, within Pf6N2E2_5038at 5815.139 kb on - strand, within Pf6N2E2_5038at 5815.302 kb on + strand, within Pf6N2E2_5038at 5815.302 kb on + strand, within Pf6N2E2_5038at 5815.303 kb on - strand, within Pf6N2E2_5038at 5815.601 kb on + strand, within Pf6N2E2_5038at 5815.602 kb on - strand, within Pf6N2E2_5038at 5815.602 kb on - strand, within Pf6N2E2_5038at 5815.770 kb on - strandat 5815.815 kb on - strandat 5815.867 kb on + strandat 5815.867 kb on + strandat 5815.868 kb on - strandat 5815.975 kb on + strandat 5815.976 kb on - strandat 5815.976 kb on - strandat 5816.022 kb on + strand, within Pf6N2E2_5039at 5816.022 kb on + strand, within Pf6N2E2_5039at 5816.023 kb on - strand, within Pf6N2E2_5039at 5816.032 kb on - strand, within Pf6N2E2_5039at 5816.032 kb on - strand, within Pf6N2E2_5039at 5816.041 kb on + strand, within Pf6N2E2_5039at 5816.139 kb on + strand, within Pf6N2E2_5039at 5816.139 kb on + strand, within Pf6N2E2_5039at 5816.140 kb on - strand, within Pf6N2E2_5039at 5816.228 kb on + strand, within Pf6N2E2_5039at 5816.229 kb on - strand, within Pf6N2E2_5039at 5816.278 kb on + strand, within Pf6N2E2_5039at 5816.279 kb on - strand, within Pf6N2E2_5039at 5816.394 kb on + strand, within Pf6N2E2_5039at 5816.394 kb on + strand, within Pf6N2E2_5039at 5816.394 kb on + strand, within Pf6N2E2_5039at 5816.394 kb on + strand, within Pf6N2E2_5039at 5816.394 kb on + strand, within Pf6N2E2_5039at 5816.394 kb on + strand, within Pf6N2E2_5039at 5816.394 kb on + strand, within Pf6N2E2_5039at 5816.395 kb on - strand, within Pf6N2E2_5039at 5816.395 kb on - strand, within Pf6N2E2_5039at 5816.395 kb on - strand, within Pf6N2E2_5039at 5816.790 kb on + strand, within Pf6N2E2_5039at 5816.791 kb on - strand, within Pf6N2E2_5039at 5816.922 kb on + strandat 5817.002 kb on + strandat 5817.211 kb on - strand, within Pf6N2E2_5040at 5817.357 kb on + strand, within Pf6N2E2_5040at 5817.358 kb on - strand, within Pf6N2E2_5040at 5817.358 kb on - strand, within Pf6N2E2_5040at 5817.390 kb on - strand, within Pf6N2E2_5040at 5817.405 kb on + strand, within Pf6N2E2_5040at 5817.405 kb on + strand, within Pf6N2E2_5040at 5817.406 kb on - strand, within Pf6N2E2_5040at 5817.406 kb on - strand, within Pf6N2E2_5040at 5817.406 kb on - strand, within Pf6N2E2_5040at 5817.558 kb on + strand, within Pf6N2E2_5040at 5817.558 kb on + strand, within Pf6N2E2_5040at 5817.558 kb on + strand, within Pf6N2E2_5040at 5817.558 kb on + strand, within Pf6N2E2_5040at 5817.558 kb on + strand, within Pf6N2E2_5040at 5817.559 kb on - strand, within Pf6N2E2_5040at 5817.567 kb on + strand, within Pf6N2E2_5040at 5817.568 kb on - strand, within Pf6N2E2_5040at 5817.568 kb on - strand, within Pf6N2E2_5040at 5817.594 kb on + strand, within Pf6N2E2_5040at 5817.656 kb on + strand, within Pf6N2E2_5040at 5817.656 kb on + strand, within Pf6N2E2_5040at 5817.657 kb on - strand, within Pf6N2E2_5040at 5817.711 kb on + strandat 5817.712 kb on - strandat 5817.712 kb on - strandat 5817.712 kb on - strandat 5817.812 kb on + strandat 5817.812 kb on + strandat 5817.812 kb on + strandat 5817.812 kb on + strandat 5817.813 kb on - strandat 5817.823 kb on + strandat 5817.824 kb on - strandat 5817.891 kb on + strandat 5817.891 kb on + strandat 5817.892 kb on - strandat 5817.892 kb on - strandat 5817.892 kb on - strandat 5817.892 kb on - strandat 5817.895 kb on + strandat 5817.896 kb on - strandat 5817.896 kb on - strandat 5817.907 kb on + strandat 5817.907 kb on + strandat 5817.907 kb on + strandat 5817.907 kb on + strandat 5817.908 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dimethyl sulfone 0.25 M
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5,814,962 + Pf6N2E2_5038 0.64 -0.0
5,815,079 + Pf6N2E2_5038 0.68 -0.2
5,815,079 + Pf6N2E2_5038 0.68 +0.2
5,815,079 + Pf6N2E2_5038 0.68 +0.8
5,815,079 + Pf6N2E2_5038 0.68 -0.3
5,815,080 - Pf6N2E2_5038 0.68 -1.1
5,815,080 - Pf6N2E2_5038 0.68 +0.0
5,815,138 + Pf6N2E2_5038 0.71 +0.8
5,815,138 + Pf6N2E2_5038 0.71 +0.3
5,815,139 - Pf6N2E2_5038 0.71 -0.8
5,815,139 - Pf6N2E2_5038 0.71 -1.0
5,815,139 - Pf6N2E2_5038 0.71 -0.1
5,815,302 + Pf6N2E2_5038 0.77 +0.4
5,815,302 + Pf6N2E2_5038 0.77 +0.4
5,815,303 - Pf6N2E2_5038 0.77 -0.8
5,815,601 + Pf6N2E2_5038 0.89 +0.4
5,815,602 - Pf6N2E2_5038 0.89 -0.4
5,815,602 - Pf6N2E2_5038 0.89 -0.9
5,815,770 - -0.1
5,815,815 - +0.5
5,815,867 + -0.6
5,815,867 + -0.6
5,815,868 - -0.0
5,815,975 + +0.1
5,815,976 - -0.4
5,815,976 - -0.7
5,816,022 + Pf6N2E2_5039 0.10 -0.1
5,816,022 + Pf6N2E2_5039 0.10 +1.0
5,816,023 - Pf6N2E2_5039 0.10 +0.1
5,816,032 - Pf6N2E2_5039 0.11 -0.0
5,816,032 - Pf6N2E2_5039 0.11 -0.0
5,816,041 + Pf6N2E2_5039 0.12 -0.7
5,816,139 + Pf6N2E2_5039 0.21 +0.4
5,816,139 + Pf6N2E2_5039 0.21 -1.1
5,816,140 - Pf6N2E2_5039 0.21 +0.3
5,816,228 + Pf6N2E2_5039 0.29 +0.8
5,816,229 - Pf6N2E2_5039 0.29 +1.2
5,816,278 + Pf6N2E2_5039 0.34 -0.7
5,816,279 - Pf6N2E2_5039 0.34 -2.5
5,816,394 + Pf6N2E2_5039 0.45 -0.2
5,816,394 + Pf6N2E2_5039 0.45 +0.6
5,816,394 + Pf6N2E2_5039 0.45 -0.6
5,816,394 + Pf6N2E2_5039 0.45 -1.4
5,816,394 + Pf6N2E2_5039 0.45 -0.7
5,816,394 + Pf6N2E2_5039 0.45 +0.5
5,816,394 + Pf6N2E2_5039 0.45 +0.2
5,816,395 - Pf6N2E2_5039 0.45 -0.5
5,816,395 - Pf6N2E2_5039 0.45 +0.2
5,816,395 - Pf6N2E2_5039 0.45 -0.4
5,816,790 + Pf6N2E2_5039 0.81 +0.3
5,816,791 - Pf6N2E2_5039 0.81 -0.4
5,816,922 + +0.2
5,817,002 + -1.0
5,817,211 - Pf6N2E2_5040 0.19 +0.0
5,817,357 + Pf6N2E2_5040 0.41 +0.6
5,817,358 - Pf6N2E2_5040 0.41 -0.7
5,817,358 - Pf6N2E2_5040 0.41 -0.6
5,817,390 - Pf6N2E2_5040 0.46 -0.4
5,817,405 + Pf6N2E2_5040 0.49 -0.4
5,817,405 + Pf6N2E2_5040 0.49 -0.3
5,817,406 - Pf6N2E2_5040 0.49 +1.9
5,817,406 - Pf6N2E2_5040 0.49 -0.6
5,817,406 - Pf6N2E2_5040 0.49 +1.6
5,817,558 + Pf6N2E2_5040 0.72 +1.0
5,817,558 + Pf6N2E2_5040 0.72 +0.1
5,817,558 + Pf6N2E2_5040 0.72 -2.1
5,817,558 + Pf6N2E2_5040 0.72 -0.3
5,817,558 + Pf6N2E2_5040 0.72 -0.4
5,817,559 - Pf6N2E2_5040 0.72 -1.1
5,817,567 + Pf6N2E2_5040 0.73 -0.9
5,817,568 - Pf6N2E2_5040 0.73 +0.8
5,817,568 - Pf6N2E2_5040 0.73 -0.8
5,817,594 + Pf6N2E2_5040 0.77 -1.1
5,817,656 + Pf6N2E2_5040 0.86 +0.7
5,817,656 + Pf6N2E2_5040 0.86 +0.4
5,817,657 - Pf6N2E2_5040 0.87 +0.1
5,817,711 + -0.2
5,817,712 - -1.2
5,817,712 - +1.1
5,817,712 - +1.1
5,817,812 + +1.2
5,817,812 + -0.2
5,817,812 + -1.1
5,817,812 + -0.5
5,817,813 - +0.4
5,817,823 + -0.7
5,817,824 - +0.4
5,817,891 + -1.5
5,817,891 + -0.5
5,817,892 - -0.4
5,817,892 - +0.1
5,817,892 - -0.7
5,817,892 - +1.2
5,817,895 + +0.3
5,817,896 - -2.6
5,817,896 - +1.0
5,817,907 + +0.7
5,817,907 + +1.5
5,817,907 + -0.3
5,817,907 + -0.2
5,817,908 - -1.0

Or see this region's nucleotide sequence