Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3975

Experiment: dimethyl sulfone 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3974 and Pf6N2E2_3975 are separated by 12 nucleotidesPf6N2E2_3975 and Pf6N2E2_3976 are separated by 5 nucleotides Pf6N2E2_3974 - Taurine transport system permease protein TauC, at 4,623,408 to 4,624,274 _3974 Pf6N2E2_3975 - Taurine transport ATP-binding protein TauB, at 4,624,287 to 4,625,147 _3975 Pf6N2E2_3976 - Taurine-binding periplasmic protein TauA, at 4,625,153 to 4,626,178 _3976 Position (kb) 4624 4625 4626Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4623.553 kb on + strand, within Pf6N2E2_3974at 4623.553 kb on + strand, within Pf6N2E2_3974at 4623.553 kb on + strand, within Pf6N2E2_3974at 4623.553 kb on + strand, within Pf6N2E2_3974at 4623.553 kb on + strand, within Pf6N2E2_3974at 4623.553 kb on + strand, within Pf6N2E2_3974at 4623.553 kb on + strand, within Pf6N2E2_3974at 4623.553 kb on + strand, within Pf6N2E2_3974at 4623.553 kb on + strand, within Pf6N2E2_3974at 4623.554 kb on - strand, within Pf6N2E2_3974at 4623.554 kb on - strand, within Pf6N2E2_3974at 4623.554 kb on - strand, within Pf6N2E2_3974at 4623.554 kb on - strand, within Pf6N2E2_3974at 4623.554 kb on - strand, within Pf6N2E2_3974at 4623.554 kb on - strand, within Pf6N2E2_3974at 4623.715 kb on + strand, within Pf6N2E2_3974at 4623.715 kb on + strand, within Pf6N2E2_3974at 4623.766 kb on + strand, within Pf6N2E2_3974at 4623.766 kb on + strand, within Pf6N2E2_3974at 4623.766 kb on + strand, within Pf6N2E2_3974at 4623.766 kb on + strand, within Pf6N2E2_3974at 4623.766 kb on + strand, within Pf6N2E2_3974at 4623.766 kb on + strand, within Pf6N2E2_3974at 4623.766 kb on + strand, within Pf6N2E2_3974at 4623.766 kb on + strand, within Pf6N2E2_3974at 4623.766 kb on + strand, within Pf6N2E2_3974at 4623.766 kb on + strand, within Pf6N2E2_3974at 4623.767 kb on - strand, within Pf6N2E2_3974at 4623.767 kb on - strand, within Pf6N2E2_3974at 4623.767 kb on - strand, within Pf6N2E2_3974at 4623.767 kb on - strand, within Pf6N2E2_3974at 4623.767 kb on - strand, within Pf6N2E2_3974at 4623.767 kb on - strand, within Pf6N2E2_3974at 4623.767 kb on - strand, within Pf6N2E2_3974at 4623.767 kb on - strand, within Pf6N2E2_3974at 4623.767 kb on - strand, within Pf6N2E2_3974at 4624.048 kb on + strand, within Pf6N2E2_3974at 4624.048 kb on + strand, within Pf6N2E2_3974at 4624.049 kb on - strand, within Pf6N2E2_3974at 4624.244 kb on - strandat 4624.244 kb on - strandat 4624.254 kb on + strandat 4624.255 kb on - strandat 4624.255 kb on - strandat 4624.255 kb on - strandat 4624.255 kb on - strandat 4624.263 kb on + strandat 4624.264 kb on - strandat 4624.291 kb on + strandat 4624.292 kb on - strandat 4624.421 kb on - strand, within Pf6N2E2_3975at 4624.699 kb on + strand, within Pf6N2E2_3975at 4624.700 kb on - strand, within Pf6N2E2_3975at 4624.738 kb on + strand, within Pf6N2E2_3975at 4624.738 kb on + strand, within Pf6N2E2_3975at 4624.738 kb on + strand, within Pf6N2E2_3975at 4624.739 kb on - strand, within Pf6N2E2_3975at 4624.739 kb on - strand, within Pf6N2E2_3975at 4625.103 kb on - strandat 4625.190 kb on + strandat 4625.190 kb on + strandat 4625.190 kb on + strandat 4625.190 kb on + strandat 4625.190 kb on + strandat 4625.191 kb on - strandat 4625.191 kb on - strandat 4625.191 kb on - strandat 4625.256 kb on + strand, within Pf6N2E2_3976at 4625.352 kb on + strand, within Pf6N2E2_3976at 4625.352 kb on + strand, within Pf6N2E2_3976at 4625.352 kb on + strand, within Pf6N2E2_3976at 4625.352 kb on + strand, within Pf6N2E2_3976at 4625.352 kb on + strand, within Pf6N2E2_3976at 4625.352 kb on + strand, within Pf6N2E2_3976at 4625.352 kb on + strand, within Pf6N2E2_3976at 4625.353 kb on - strand, within Pf6N2E2_3976at 4625.353 kb on - strand, within Pf6N2E2_3976at 4625.353 kb on - strand, within Pf6N2E2_3976at 4625.357 kb on - strand, within Pf6N2E2_3976at 4625.427 kb on + strand, within Pf6N2E2_3976at 4625.427 kb on + strand, within Pf6N2E2_3976at 4625.427 kb on + strand, within Pf6N2E2_3976at 4625.428 kb on - strand, within Pf6N2E2_3976at 4625.428 kb on - strand, within Pf6N2E2_3976at 4625.428 kb on - strand, within Pf6N2E2_3976at 4625.495 kb on + strand, within Pf6N2E2_3976at 4625.495 kb on + strand, within Pf6N2E2_3976at 4625.502 kb on + strand, within Pf6N2E2_3976at 4625.503 kb on - strand, within Pf6N2E2_3976at 4625.503 kb on - strand, within Pf6N2E2_3976at 4625.640 kb on + strand, within Pf6N2E2_3976at 4625.640 kb on + strand, within Pf6N2E2_3976at 4625.640 kb on + strand, within Pf6N2E2_3976at 4625.640 kb on + strand, within Pf6N2E2_3976at 4625.640 kb on + strand, within Pf6N2E2_3976at 4625.641 kb on - strand, within Pf6N2E2_3976at 4625.641 kb on - strand, within Pf6N2E2_3976at 4625.691 kb on + strand, within Pf6N2E2_3976at 4625.691 kb on + strand, within Pf6N2E2_3976at 4625.691 kb on + strand, within Pf6N2E2_3976at 4625.691 kb on + strand, within Pf6N2E2_3976at 4625.692 kb on - strand, within Pf6N2E2_3976at 4625.692 kb on - strand, within Pf6N2E2_3976at 4625.799 kb on + strand, within Pf6N2E2_3976at 4625.800 kb on - strand, within Pf6N2E2_3976at 4625.802 kb on + strand, within Pf6N2E2_3976at 4626.039 kb on + strand, within Pf6N2E2_3976at 4626.039 kb on + strand, within Pf6N2E2_3976at 4626.040 kb on - strand, within Pf6N2E2_3976at 4626.040 kb on - strand, within Pf6N2E2_3976at 4626.040 kb on - strand, within Pf6N2E2_3976

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Per-strain Table

Position Strand Gene LocusTag Fraction dimethyl sulfone 0.25 M
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4,623,553 + Pf6N2E2_3974 0.17 +0.8
4,623,553 + Pf6N2E2_3974 0.17 +0.2
4,623,553 + Pf6N2E2_3974 0.17 -1.1
4,623,553 + Pf6N2E2_3974 0.17 +0.5
4,623,553 + Pf6N2E2_3974 0.17 -2.5
4,623,553 + Pf6N2E2_3974 0.17 -0.9
4,623,553 + Pf6N2E2_3974 0.17 -0.4
4,623,553 + Pf6N2E2_3974 0.17 -0.9
4,623,553 + Pf6N2E2_3974 0.17 -0.6
4,623,554 - Pf6N2E2_3974 0.17 +1.2
4,623,554 - Pf6N2E2_3974 0.17 -2.3
4,623,554 - Pf6N2E2_3974 0.17 +0.3
4,623,554 - Pf6N2E2_3974 0.17 +0.2
4,623,554 - Pf6N2E2_3974 0.17 +0.1
4,623,554 - Pf6N2E2_3974 0.17 +0.4
4,623,715 + Pf6N2E2_3974 0.35 -0.3
4,623,715 + Pf6N2E2_3974 0.35 -1.2
4,623,766 + Pf6N2E2_3974 0.41 -0.5
4,623,766 + Pf6N2E2_3974 0.41 -0.6
4,623,766 + Pf6N2E2_3974 0.41 +0.1
4,623,766 + Pf6N2E2_3974 0.41 +0.3
4,623,766 + Pf6N2E2_3974 0.41 +0.3
4,623,766 + Pf6N2E2_3974 0.41 +0.8
4,623,766 + Pf6N2E2_3974 0.41 +0.9
4,623,766 + Pf6N2E2_3974 0.41 +1.5
4,623,766 + Pf6N2E2_3974 0.41 -0.4
4,623,766 + Pf6N2E2_3974 0.41 +0.2
4,623,767 - Pf6N2E2_3974 0.41 -0.7
4,623,767 - Pf6N2E2_3974 0.41 +0.8
4,623,767 - Pf6N2E2_3974 0.41 +0.5
4,623,767 - Pf6N2E2_3974 0.41 -0.9
4,623,767 - Pf6N2E2_3974 0.41 +0.3
4,623,767 - Pf6N2E2_3974 0.41 -0.5
4,623,767 - Pf6N2E2_3974 0.41 -0.7
4,623,767 - Pf6N2E2_3974 0.41 +1.8
4,623,767 - Pf6N2E2_3974 0.41 +0.1
4,624,048 + Pf6N2E2_3974 0.74 -2.1
4,624,048 + Pf6N2E2_3974 0.74 -0.1
4,624,049 - Pf6N2E2_3974 0.74 +1.4
4,624,244 - -0.8
4,624,244 - +0.4
4,624,254 + -0.2
4,624,255 - +1.3
4,624,255 - +0.8
4,624,255 - +0.1
4,624,255 - -1.0
4,624,263 + +0.3
4,624,264 - -1.2
4,624,291 + -1.8
4,624,292 - +1.2
4,624,421 - Pf6N2E2_3975 0.16 +0.9
4,624,699 + Pf6N2E2_3975 0.48 -1.8
4,624,700 - Pf6N2E2_3975 0.48 -0.1
4,624,738 + Pf6N2E2_3975 0.52 -2.8
4,624,738 + Pf6N2E2_3975 0.52 -0.8
4,624,738 + Pf6N2E2_3975 0.52 -1.3
4,624,739 - Pf6N2E2_3975 0.52 -0.8
4,624,739 - Pf6N2E2_3975 0.52 +0.2
4,625,103 - +0.6
4,625,190 + -1.0
4,625,190 + +0.2
4,625,190 + -0.0
4,625,190 + +0.7
4,625,190 + +1.0
4,625,191 - +2.2
4,625,191 - +0.9
4,625,191 - -0.5
4,625,256 + Pf6N2E2_3976 0.10 -2.1
4,625,352 + Pf6N2E2_3976 0.19 -0.2
4,625,352 + Pf6N2E2_3976 0.19 +0.7
4,625,352 + Pf6N2E2_3976 0.19 -0.7
4,625,352 + Pf6N2E2_3976 0.19 -0.3
4,625,352 + Pf6N2E2_3976 0.19 +0.5
4,625,352 + Pf6N2E2_3976 0.19 +0.2
4,625,352 + Pf6N2E2_3976 0.19 +0.6
4,625,353 - Pf6N2E2_3976 0.19 +2.0
4,625,353 - Pf6N2E2_3976 0.19 +1.2
4,625,353 - Pf6N2E2_3976 0.19 -0.9
4,625,357 - Pf6N2E2_3976 0.20 +0.5
4,625,427 + Pf6N2E2_3976 0.27 +0.1
4,625,427 + Pf6N2E2_3976 0.27 -0.6
4,625,427 + Pf6N2E2_3976 0.27 +0.5
4,625,428 - Pf6N2E2_3976 0.27 -1.2
4,625,428 - Pf6N2E2_3976 0.27 -0.4
4,625,428 - Pf6N2E2_3976 0.27 +0.9
4,625,495 + Pf6N2E2_3976 0.33 +0.5
4,625,495 + Pf6N2E2_3976 0.33 -0.7
4,625,502 + Pf6N2E2_3976 0.34 +0.3
4,625,503 - Pf6N2E2_3976 0.34 -0.5
4,625,503 - Pf6N2E2_3976 0.34 -1.8
4,625,640 + Pf6N2E2_3976 0.47 +0.5
4,625,640 + Pf6N2E2_3976 0.47 -0.2
4,625,640 + Pf6N2E2_3976 0.47 +0.9
4,625,640 + Pf6N2E2_3976 0.47 +0.1
4,625,640 + Pf6N2E2_3976 0.47 +0.4
4,625,641 - Pf6N2E2_3976 0.48 +0.4
4,625,641 - Pf6N2E2_3976 0.48 -1.1
4,625,691 + Pf6N2E2_3976 0.52 +0.7
4,625,691 + Pf6N2E2_3976 0.52 -1.0
4,625,691 + Pf6N2E2_3976 0.52 +1.1
4,625,691 + Pf6N2E2_3976 0.52 -0.8
4,625,692 - Pf6N2E2_3976 0.53 +0.6
4,625,692 - Pf6N2E2_3976 0.53 +0.8
4,625,799 + Pf6N2E2_3976 0.63 +1.4
4,625,800 - Pf6N2E2_3976 0.63 +1.5
4,625,802 + Pf6N2E2_3976 0.63 -0.2
4,626,039 + Pf6N2E2_3976 0.86 -0.1
4,626,039 + Pf6N2E2_3976 0.86 +0.1
4,626,040 - Pf6N2E2_3976 0.86 +1.3
4,626,040 - Pf6N2E2_3976 0.86 -0.1
4,626,040 - Pf6N2E2_3976 0.86 -0.5

Or see this region's nucleotide sequence