Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS23435

Experiment: Carbon source D-Glucose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS23430 and HSERO_RS23435 are separated by 167 nucleotidesHSERO_RS23435 and HSERO_RS23440 are separated by 99 nucleotides HSERO_RS23430: HSERO_RS23430 - Zn-dependent hydrolase, at 5,375,223 to 5,376,287 _RS23430 HSERO_RS23435: HSERO_RS23435 - MerR family transcriptional regulator, at 5,376,455 to 5,376,883 _RS23435 HSERO_RS23440: HSERO_RS23440 - isovaleryl-CoA dehydrogenase, at 5,376,983 to 5,378,167 _RS23440 Position (kb) 5376 5377Strain fitness (log2 ratio) -1 0 1 2at 5375.489 kb on - strand, within HSERO_RS23430at 5375.494 kb on + strand, within HSERO_RS23430at 5375.550 kb on + strand, within HSERO_RS23430at 5375.594 kb on - strand, within HSERO_RS23430at 5375.625 kb on - strand, within HSERO_RS23430at 5375.888 kb on - strand, within HSERO_RS23430at 5375.904 kb on + strand, within HSERO_RS23430at 5376.185 kb on - strandat 5376.577 kb on + strand, within HSERO_RS23435at 5376.701 kb on - strand, within HSERO_RS23435at 5376.725 kb on + strand, within HSERO_RS23435at 5376.980 kb on + strandat 5377.155 kb on + strand, within HSERO_RS23440at 5377.263 kb on - strand, within HSERO_RS23440at 5377.338 kb on + strand, within HSERO_RS23440at 5377.738 kb on + strand, within HSERO_RS23440

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 20 mM
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5,375,489 - HSERO_RS23430 0.25 +0.8
5,375,494 + HSERO_RS23430 0.25 +0.2
5,375,550 + HSERO_RS23430 0.31 +1.5
5,375,594 - HSERO_RS23430 0.35 +0.5
5,375,625 - HSERO_RS23430 0.38 +0.5
5,375,888 - HSERO_RS23430 0.62 -0.7
5,375,904 + HSERO_RS23430 0.64 -0.5
5,376,185 - -0.5
5,376,577 + HSERO_RS23435 0.28 +1.9
5,376,701 - HSERO_RS23435 0.57 +0.5
5,376,725 + HSERO_RS23435 0.63 +0.7
5,376,980 + -0.1
5,377,155 + HSERO_RS23440 0.15 +0.0
5,377,263 - HSERO_RS23440 0.24 +0.0
5,377,338 + HSERO_RS23440 0.30 -0.6
5,377,738 + HSERO_RS23440 0.64 +0.0

Or see this region's nucleotide sequence