Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21470

Experiment: Carbon source D-Glucose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS21465 and HSERO_RS21470 are separated by 210 nucleotidesHSERO_RS21470 and HSERO_RS21475 are separated by 52 nucleotides HSERO_RS21465: HSERO_RS21465 - porin, at 4,914,412 to 4,915,575 _RS21465 HSERO_RS21470: HSERO_RS21470 - hypothetical protein, at 4,915,786 to 4,916,454 _RS21470 HSERO_RS21475: HSERO_RS21475 - recombinase XerC, at 4,916,507 to 4,917,487 _RS21475 Position (kb) 4915 4916 4917Strain fitness (log2 ratio) -1 0 1at 4915.810 kb on - strandat 4915.981 kb on - strand, within HSERO_RS21470at 4916.365 kb on - strand, within HSERO_RS21470at 4916.431 kb on + strandat 4916.982 kb on + strand, within HSERO_RS21475at 4917.051 kb on + strand, within HSERO_RS21475at 4917.162 kb on + strand, within HSERO_RS21475

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 20 mM
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4,915,810 - +0.6
4,915,981 - HSERO_RS21470 0.29 +0.3
4,916,365 - HSERO_RS21470 0.87 +0.7
4,916,431 + -0.2
4,916,982 + HSERO_RS21475 0.48 -0.4
4,917,051 + HSERO_RS21475 0.55 +0.9
4,917,162 + HSERO_RS21475 0.67 +1.1

Or see this region's nucleotide sequence