Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10730

Experiment: Carbon source D-Glucose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS10725 and HSERO_RS10730 are separated by 37 nucleotidesHSERO_RS10730 and HSERO_RS10735 are separated by 47 nucleotides HSERO_RS10725: HSERO_RS10725 - DNA polymerase III, at 2,411,289 to 2,412,311 _RS10725 HSERO_RS10730: HSERO_RS10730 - hypothetical protein, at 2,412,349 to 2,413,353 _RS10730 HSERO_RS10735: HSERO_RS10735 - major facilitator transporter, at 2,413,401 to 2,414,672 _RS10735 Position (kb) 2412 2413 2414Strain fitness (log2 ratio) -1 0 1at 2412.383 kb on + strandat 2412.391 kb on - strandat 2412.391 kb on - strandat 2412.391 kb on - strandat 2412.539 kb on + strand, within HSERO_RS10730at 2412.971 kb on - strand, within HSERO_RS10730at 2413.163 kb on - strand, within HSERO_RS10730at 2413.302 kb on - strandat 2413.337 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 20 mM
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2,412,383 + -0.3
2,412,391 - +0.5
2,412,391 - -0.4
2,412,391 - -0.6
2,412,539 + HSERO_RS10730 0.19 +0.4
2,412,971 - HSERO_RS10730 0.62 +0.7
2,413,163 - HSERO_RS10730 0.81 +0.6
2,413,302 - +0.3
2,413,337 + +0.3

Or see this region's nucleotide sequence