Experiment: Carbon source D-Glucose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03990 and HSERO_RS03995 are separated by 2 nucleotides HSERO_RS03995 and HSERO_RS04000 are separated by 93 nucleotides HSERO_RS04000 and HSERO_RS04005 are separated by 42 nucleotides
HSERO_RS03990: HSERO_RS03990 - type III secretion protein, at 875,333 to 876,448
_RS03990
HSERO_RS03995: HSERO_RS03995 - hypothetical protein, at 876,451 to 876,981
_RS03995
HSERO_RS04000: HSERO_RS04000 - type III secretion protein, at 877,075 to 877,464
_RS04000
HSERO_RS04005: HSERO_RS04005 - type III secretion protein, at 877,507 to 878,358
_RS04005
Position (kb) 876
877 Strain fitness (log2 ratio) -2
-1
0
1
2 at 875.551 kb on - strand, within HSERO_RS03990 at 875.715 kb on - strand, within HSERO_RS03990 at 875.720 kb on - strand, within HSERO_RS03990 at 875.752 kb on + strand, within HSERO_RS03990 at 875.760 kb on - strand, within HSERO_RS03990 at 875.764 kb on + strand, within HSERO_RS03990 at 875.764 kb on + strand, within HSERO_RS03990 at 875.772 kb on - strand, within HSERO_RS03990 at 875.857 kb on - strand, within HSERO_RS03990 at 875.964 kb on + strand, within HSERO_RS03990 at 876.031 kb on + strand, within HSERO_RS03990 at 876.219 kb on - strand, within HSERO_RS03990 at 876.240 kb on - strand, within HSERO_RS03990 at 876.343 kb on - strand at 876.375 kb on + strand at 876.494 kb on + strand at 876.609 kb on + strand, within HSERO_RS03995 at 876.806 kb on - strand, within HSERO_RS03995 at 876.968 kb on + strand at 877.019 kb on + strand at 877.019 kb on + strand at 877.019 kb on + strand at 877.027 kb on - strand at 877.027 kb on - strand at 877.063 kb on + strand at 877.085 kb on + strand at 877.093 kb on - strand at 877.225 kb on + strand, within HSERO_RS04000 at 877.415 kb on - strand, within HSERO_RS04000 at 877.671 kb on + strand, within HSERO_RS04005 at 877.678 kb on + strand at 877.970 kb on + strand, within HSERO_RS04005 at 877.978 kb on - strand, within HSERO_RS04005
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Glucose 20 mM remove 875,551 - HSERO_RS03990 0.20 -1.0 875,715 - HSERO_RS03990 0.34 +0.2 875,720 - HSERO_RS03990 0.35 +0.0 875,752 + HSERO_RS03990 0.38 +1.1 875,760 - HSERO_RS03990 0.38 +0.4 875,764 + HSERO_RS03990 0.39 -0.1 875,764 + HSERO_RS03990 0.39 -0.2 875,772 - HSERO_RS03990 0.39 -0.0 875,857 - HSERO_RS03990 0.47 -2.1 875,964 + HSERO_RS03990 0.57 -0.4 876,031 + HSERO_RS03990 0.63 -0.5 876,219 - HSERO_RS03990 0.79 -0.0 876,240 - HSERO_RS03990 0.81 +1.8 876,343 - -0.3 876,375 + +0.1 876,494 + +0.5 876,609 + HSERO_RS03995 0.30 +0.3 876,806 - HSERO_RS03995 0.67 +1.0 876,968 + +0.6 877,019 + +0.2 877,019 + +0.4 877,019 + +0.3 877,027 - +0.8 877,027 - -0.5 877,063 + +1.8 877,085 + -0.2 877,093 - +0.6 877,225 + HSERO_RS04000 0.38 +0.3 877,415 - HSERO_RS04000 0.87 +0.4 877,671 + HSERO_RS04005 0.19 +0.2 877,678 + +0.2 877,970 + HSERO_RS04005 0.54 +0.3 877,978 - HSERO_RS04005 0.55 +1.8
Or see this region's nucleotide sequence