Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01090

Experiment: Carbon source D-Glucose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS01085 and HSERO_RS01090 are separated by 35 nucleotidesHSERO_RS01090 and HSERO_RS01095 are separated by 240 nucleotides HSERO_RS01085: HSERO_RS01085 - tail protein, at 229,013 to 230,455 _RS01085 HSERO_RS01090: HSERO_RS01090 - hypothetical protein, at 230,491 to 230,679 _RS01090 HSERO_RS01095: HSERO_RS01095 - hypothetical protein, at 230,920 to 231,252 _RS01095 Position (kb) 230 231Strain fitness (log2 ratio) -1 0 1 2at 229.547 kb on + strand, within HSERO_RS01085at 229.649 kb on - strand, within HSERO_RS01085at 229.760 kb on + strand, within HSERO_RS01085at 229.855 kb on + strand, within HSERO_RS01085at 229.855 kb on + strand, within HSERO_RS01085at 229.865 kb on - strand, within HSERO_RS01085at 229.976 kb on + strandat 230.026 kb on + strand, within HSERO_RS01085at 230.034 kb on - strand, within HSERO_RS01085at 230.379 kb on + strandat 230.397 kb on - strandat 230.433 kb on - strandat 230.544 kb on + strand, within HSERO_RS01090at 230.600 kb on - strand, within HSERO_RS01090at 230.836 kb on + strandat 230.855 kb on - strandat 230.926 kb on - strandat 230.968 kb on + strand, within HSERO_RS01095at 230.999 kb on + strand, within HSERO_RS01095at 231.357 kb on - strandat 231.459 kb on - strandat 231.588 kb on + strandat 231.664 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 20 mM
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229,547 + HSERO_RS01085 0.37 -0.1
229,649 - HSERO_RS01085 0.44 -0.1
229,760 + HSERO_RS01085 0.52 +0.8
229,855 + HSERO_RS01085 0.58 +1.7
229,855 + HSERO_RS01085 0.58 -0.6
229,865 - HSERO_RS01085 0.59 +0.0
229,976 + +1.5
230,026 + HSERO_RS01085 0.70 -0.3
230,034 - HSERO_RS01085 0.71 -0.6
230,379 + +0.0
230,397 - -0.8
230,433 - +0.2
230,544 + HSERO_RS01090 0.28 +1.9
230,600 - HSERO_RS01090 0.58 +0.3
230,836 + +0.4
230,855 - -1.5
230,926 - -0.4
230,968 + HSERO_RS01095 0.14 +0.2
230,999 + HSERO_RS01095 0.24 -0.7
231,357 - -0.2
231,459 - -0.4
231,588 + -0.1
231,664 - -0.3

Or see this region's nucleotide sequence