Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22820 and ABZR87_RS22825 are separated by 27 nucleotides ABZR87_RS22825 and ABZR87_RS22830 overlap by 4 nucleotides ABZR87_RS22830 and ABZR87_RS22835 overlap by 1 nucleotides
ABZR87_RS22820: ABZR87_RS22820 - alkaline phosphatase D family protein, at 1,481,634 to 1,483,259
_RS22820
ABZR87_RS22825: ABZR87_RS22825 - 2-dehydropantoate 2-reductase, at 1,483,287 to 1,484,300
_RS22825
ABZR87_RS22830: ABZR87_RS22830 - Crp/Fnr family transcriptional regulator, at 1,484,297 to 1,484,986
_RS22830
ABZR87_RS22835: ABZR87_RS22835 - 2OG-Fe(II) oxygenase, at 1,484,986 to 1,485,378
_RS22835
Position (kb) 1483
1484
1485 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1482.331 kb on - strand, within ABZR87_RS22820 at 1482.348 kb on + strand, within ABZR87_RS22820 at 1482.349 kb on - strand, within ABZR87_RS22820 at 1482.378 kb on + strand, within ABZR87_RS22820 at 1482.379 kb on - strand, within ABZR87_RS22820 at 1482.456 kb on + strand, within ABZR87_RS22820 at 1482.456 kb on + strand, within ABZR87_RS22820 at 1482.463 kb on + strand, within ABZR87_RS22820 at 1482.493 kb on - strand, within ABZR87_RS22820 at 1482.495 kb on + strand, within ABZR87_RS22820 at 1482.624 kb on + strand, within ABZR87_RS22820 at 1482.625 kb on - strand, within ABZR87_RS22820 at 1482.625 kb on - strand, within ABZR87_RS22820 at 1482.763 kb on - strand, within ABZR87_RS22820 at 1482.763 kb on - strand, within ABZR87_RS22820 at 1483.133 kb on + strand at 1483.134 kb on - strand at 1483.134 kb on - strand at 1483.134 kb on - strand at 1483.236 kb on + strand at 1483.236 kb on + strand at 1483.236 kb on + strand at 1483.237 kb on - strand at 1483.237 kb on - strand at 1483.329 kb on + strand at 1483.330 kb on - strand at 1483.330 kb on - strand at 1483.330 kb on - strand at 1483.432 kb on - strand, within ABZR87_RS22825 at 1483.473 kb on + strand, within ABZR87_RS22825 at 1483.473 kb on + strand, within ABZR87_RS22825 at 1483.473 kb on + strand, within ABZR87_RS22825 at 1483.473 kb on + strand, within ABZR87_RS22825 at 1483.474 kb on - strand, within ABZR87_RS22825 at 1483.474 kb on - strand, within ABZR87_RS22825 at 1483.474 kb on - strand, within ABZR87_RS22825 at 1484.298 kb on + strand at 1484.361 kb on + strand at 1484.361 kb on + strand at 1484.577 kb on + strand, within ABZR87_RS22830 at 1484.577 kb on + strand, within ABZR87_RS22830 at 1485.047 kb on + strand, within ABZR87_RS22835 at 1485.047 kb on + strand, within ABZR87_RS22835 at 1485.048 kb on - strand, within ABZR87_RS22835 at 1485.048 kb on - strand, within ABZR87_RS22835 at 1485.048 kb on - strand, within ABZR87_RS22835 at 1485.050 kb on - strand, within ABZR87_RS22835 at 1485.261 kb on - strand, within ABZR87_RS22835
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 1,482,331 - ABZR87_RS22820 0.43 -0.6 1,482,348 + ABZR87_RS22820 0.44 +0.1 1,482,349 - ABZR87_RS22820 0.44 -0.3 1,482,378 + ABZR87_RS22820 0.46 +3.4 1,482,379 - ABZR87_RS22820 0.46 -1.3 1,482,456 + ABZR87_RS22820 0.51 +1.3 1,482,456 + ABZR87_RS22820 0.51 -0.6 1,482,463 + ABZR87_RS22820 0.51 +0.3 1,482,493 - ABZR87_RS22820 0.53 +0.7 1,482,495 + ABZR87_RS22820 0.53 +2.2 1,482,624 + ABZR87_RS22820 0.61 -2.2 1,482,625 - ABZR87_RS22820 0.61 +0.1 1,482,625 - ABZR87_RS22820 0.61 +0.5 1,482,763 - ABZR87_RS22820 0.69 -0.4 1,482,763 - ABZR87_RS22820 0.69 +0.2 1,483,133 + -1.4 1,483,134 - +0.1 1,483,134 - -1.2 1,483,134 - -0.3 1,483,236 + -2.0 1,483,236 + +0.7 1,483,236 + -0.6 1,483,237 - +0.8 1,483,237 - +0.5 1,483,329 + +1.0 1,483,330 - +1.3 1,483,330 - +1.0 1,483,330 - -2.1 1,483,432 - ABZR87_RS22825 0.14 +0.5 1,483,473 + ABZR87_RS22825 0.18 +0.6 1,483,473 + ABZR87_RS22825 0.18 +0.3 1,483,473 + ABZR87_RS22825 0.18 -0.7 1,483,473 + ABZR87_RS22825 0.18 +0.9 1,483,474 - ABZR87_RS22825 0.18 -0.3 1,483,474 - ABZR87_RS22825 0.18 -0.6 1,483,474 - ABZR87_RS22825 0.18 -0.1 1,484,298 + -1.7 1,484,361 + +0.6 1,484,361 + +0.5 1,484,577 + ABZR87_RS22830 0.41 -1.4 1,484,577 + ABZR87_RS22830 0.41 -0.9 1,485,047 + ABZR87_RS22835 0.16 -0.5 1,485,047 + ABZR87_RS22835 0.16 +1.7 1,485,048 - ABZR87_RS22835 0.16 -1.0 1,485,048 - ABZR87_RS22835 0.16 +1.9 1,485,048 - ABZR87_RS22835 0.16 -1.3 1,485,050 - ABZR87_RS22835 0.16 +0.4 1,485,261 - ABZR87_RS22835 0.70 +0.4
Or see this region's nucleotide sequence