Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22655

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22650 and ABZR87_RS22655 overlap by 4 nucleotidesABZR87_RS22655 and ABZR87_RS22660 are separated by 1 nucleotides ABZR87_RS22650: ABZR87_RS22650 - PgaD family protein, at 1,437,999 to 1,439,009 _RS22650 ABZR87_RS22655: ABZR87_RS22655 - poly-beta-1,6-N-acetyl-D-glucosamine synthase, at 1,439,006 to 1,440,292 _RS22655 ABZR87_RS22660: ABZR87_RS22660 - poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, at 1,440,294 to 1,442,444 _RS22660 Position (kb) 1439 1440 1441Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1438.228 kb on + strand, within ABZR87_RS22650at 1438.228 kb on + strand, within ABZR87_RS22650at 1438.228 kb on + strand, within ABZR87_RS22650at 1438.229 kb on - strand, within ABZR87_RS22650at 1438.477 kb on + strand, within ABZR87_RS22650at 1438.761 kb on + strand, within ABZR87_RS22650at 1438.761 kb on + strand, within ABZR87_RS22650at 1438.761 kb on + strand, within ABZR87_RS22650at 1438.762 kb on - strand, within ABZR87_RS22650at 1438.762 kb on - strand, within ABZR87_RS22650at 1438.762 kb on - strand, within ABZR87_RS22650at 1438.762 kb on - strand, within ABZR87_RS22650at 1438.798 kb on + strand, within ABZR87_RS22650at 1438.798 kb on + strand, within ABZR87_RS22650at 1438.799 kb on - strand, within ABZR87_RS22650at 1438.799 kb on - strand, within ABZR87_RS22650at 1438.799 kb on - strand, within ABZR87_RS22650at 1438.853 kb on - strand, within ABZR87_RS22650at 1438.861 kb on + strand, within ABZR87_RS22650at 1438.861 kb on + strand, within ABZR87_RS22650at 1438.861 kb on + strand, within ABZR87_RS22650at 1438.862 kb on - strand, within ABZR87_RS22650at 1438.862 kb on - strand, within ABZR87_RS22650at 1438.862 kb on - strand, within ABZR87_RS22650at 1438.862 kb on - strand, within ABZR87_RS22650at 1438.862 kb on - strand, within ABZR87_RS22650at 1438.923 kb on + strandat 1438.924 kb on - strandat 1438.938 kb on - strandat 1439.075 kb on - strandat 1439.166 kb on + strand, within ABZR87_RS22655at 1439.166 kb on + strand, within ABZR87_RS22655at 1439.343 kb on + strand, within ABZR87_RS22655at 1439.344 kb on - strand, within ABZR87_RS22655at 1439.344 kb on - strand, within ABZR87_RS22655at 1439.344 kb on - strand, within ABZR87_RS22655at 1439.367 kb on + strand, within ABZR87_RS22655at 1439.367 kb on + strand, within ABZR87_RS22655at 1439.367 kb on + strand, within ABZR87_RS22655at 1439.368 kb on - strand, within ABZR87_RS22655at 1439.475 kb on + strand, within ABZR87_RS22655at 1439.475 kb on + strand, within ABZR87_RS22655at 1439.475 kb on + strand, within ABZR87_RS22655at 1439.530 kb on - strand, within ABZR87_RS22655at 1439.673 kb on + strand, within ABZR87_RS22655at 1439.674 kb on - strand, within ABZR87_RS22655at 1440.031 kb on - strand, within ABZR87_RS22655at 1440.094 kb on - strand, within ABZR87_RS22655at 1440.138 kb on - strand, within ABZR87_RS22655at 1440.189 kb on + strandat 1440.190 kb on - strandat 1440.220 kb on - strandat 1440.220 kb on - strandat 1440.238 kb on - strandat 1440.240 kb on + strandat 1440.240 kb on + strandat 1440.293 kb on - strandat 1440.308 kb on + strandat 1440.308 kb on + strandat 1440.308 kb on + strandat 1440.309 kb on - strandat 1440.309 kb on - strandat 1440.451 kb on + strandat 1440.451 kb on + strandat 1440.451 kb on + strandat 1440.451 kb on + strandat 1440.451 kb on + strandat 1440.451 kb on + strandat 1440.452 kb on - strandat 1440.452 kb on - strandat 1440.452 kb on - strandat 1440.452 kb on - strandat 1440.452 kb on - strandat 1440.520 kb on + strand, within ABZR87_RS22660at 1440.521 kb on - strand, within ABZR87_RS22660at 1440.521 kb on - strand, within ABZR87_RS22660at 1440.521 kb on - strand, within ABZR87_RS22660at 1440.523 kb on + strand, within ABZR87_RS22660at 1440.530 kb on - strand, within ABZR87_RS22660at 1440.721 kb on + strand, within ABZR87_RS22660at 1440.722 kb on - strand, within ABZR87_RS22660at 1440.746 kb on - strand, within ABZR87_RS22660at 1440.773 kb on - strand, within ABZR87_RS22660at 1440.863 kb on - strand, within ABZR87_RS22660at 1440.863 kb on - strand, within ABZR87_RS22660at 1440.863 kb on - strand, within ABZR87_RS22660at 1440.994 kb on + strand, within ABZR87_RS22660at 1440.994 kb on + strand, within ABZR87_RS22660at 1441.027 kb on + strand, within ABZR87_RS22660at 1441.028 kb on - strand, within ABZR87_RS22660at 1441.096 kb on + strand, within ABZR87_RS22660at 1441.096 kb on + strand, within ABZR87_RS22660at 1441.096 kb on + strand, within ABZR87_RS22660at 1441.097 kb on - strand, within ABZR87_RS22660at 1441.234 kb on + strand, within ABZR87_RS22660at 1441.235 kb on - strand, within ABZR87_RS22660at 1441.258 kb on + strand, within ABZR87_RS22660at 1441.258 kb on + strand, within ABZR87_RS22660at 1441.258 kb on + strand, within ABZR87_RS22660at 1441.259 kb on - strand, within ABZR87_RS22660at 1441.259 kb on - strand, within ABZR87_RS22660

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,438,228 + ABZR87_RS22650 0.23 -0.2
1,438,228 + ABZR87_RS22650 0.23 +0.5
1,438,228 + ABZR87_RS22650 0.23 +0.5
1,438,229 - ABZR87_RS22650 0.23 -0.9
1,438,477 + ABZR87_RS22650 0.47 +0.5
1,438,761 + ABZR87_RS22650 0.75 +0.8
1,438,761 + ABZR87_RS22650 0.75 -0.9
1,438,761 + ABZR87_RS22650 0.75 -0.1
1,438,762 - ABZR87_RS22650 0.75 +2.0
1,438,762 - ABZR87_RS22650 0.75 -0.5
1,438,762 - ABZR87_RS22650 0.75 +3.2
1,438,762 - ABZR87_RS22650 0.75 +1.1
1,438,798 + ABZR87_RS22650 0.79 +0.4
1,438,798 + ABZR87_RS22650 0.79 +0.4
1,438,799 - ABZR87_RS22650 0.79 +0.1
1,438,799 - ABZR87_RS22650 0.79 +0.3
1,438,799 - ABZR87_RS22650 0.79 -0.4
1,438,853 - ABZR87_RS22650 0.84 -0.4
1,438,861 + ABZR87_RS22650 0.85 -0.0
1,438,861 + ABZR87_RS22650 0.85 +0.4
1,438,861 + ABZR87_RS22650 0.85 +0.4
1,438,862 - ABZR87_RS22650 0.85 -2.2
1,438,862 - ABZR87_RS22650 0.85 +0.2
1,438,862 - ABZR87_RS22650 0.85 +0.9
1,438,862 - ABZR87_RS22650 0.85 -2.7
1,438,862 - ABZR87_RS22650 0.85 -1.0
1,438,923 + +0.6
1,438,924 - -1.6
1,438,938 - -1.8
1,439,075 - +0.2
1,439,166 + ABZR87_RS22655 0.12 +0.8
1,439,166 + ABZR87_RS22655 0.12 +0.1
1,439,343 + ABZR87_RS22655 0.26 +0.6
1,439,344 - ABZR87_RS22655 0.26 +0.5
1,439,344 - ABZR87_RS22655 0.26 +0.8
1,439,344 - ABZR87_RS22655 0.26 -0.2
1,439,367 + ABZR87_RS22655 0.28 -0.7
1,439,367 + ABZR87_RS22655 0.28 +0.1
1,439,367 + ABZR87_RS22655 0.28 +0.1
1,439,368 - ABZR87_RS22655 0.28 +0.9
1,439,475 + ABZR87_RS22655 0.36 -0.1
1,439,475 + ABZR87_RS22655 0.36 -0.7
1,439,475 + ABZR87_RS22655 0.36 -0.7
1,439,530 - ABZR87_RS22655 0.41 +1.1
1,439,673 + ABZR87_RS22655 0.52 +0.2
1,439,674 - ABZR87_RS22655 0.52 -1.3
1,440,031 - ABZR87_RS22655 0.80 -0.2
1,440,094 - ABZR87_RS22655 0.85 -0.2
1,440,138 - ABZR87_RS22655 0.88 -0.1
1,440,189 + +0.5
1,440,190 - +0.8
1,440,220 - -2.7
1,440,220 - -0.3
1,440,238 - -1.0
1,440,240 + +0.7
1,440,240 + +0.5
1,440,293 - -0.4
1,440,308 + +0.2
1,440,308 + -0.2
1,440,308 + +3.0
1,440,309 - -0.2
1,440,309 - +0.4
1,440,451 + -0.5
1,440,451 + +0.4
1,440,451 + -1.6
1,440,451 + +1.9
1,440,451 + +2.0
1,440,451 + +0.4
1,440,452 - -0.8
1,440,452 - +0.2
1,440,452 - -0.1
1,440,452 - +0.2
1,440,452 - -1.1
1,440,520 + ABZR87_RS22660 0.11 +0.8
1,440,521 - ABZR87_RS22660 0.11 -1.6
1,440,521 - ABZR87_RS22660 0.11 -0.1
1,440,521 - ABZR87_RS22660 0.11 +1.6
1,440,523 + ABZR87_RS22660 0.11 -0.3
1,440,530 - ABZR87_RS22660 0.11 -0.3
1,440,721 + ABZR87_RS22660 0.20 -1.1
1,440,722 - ABZR87_RS22660 0.20 +1.0
1,440,746 - ABZR87_RS22660 0.21 -1.1
1,440,773 - ABZR87_RS22660 0.22 -2.0
1,440,863 - ABZR87_RS22660 0.26 -0.7
1,440,863 - ABZR87_RS22660 0.26 +2.5
1,440,863 - ABZR87_RS22660 0.26 -1.2
1,440,994 + ABZR87_RS22660 0.33 -1.6
1,440,994 + ABZR87_RS22660 0.33 +1.1
1,441,027 + ABZR87_RS22660 0.34 +1.3
1,441,028 - ABZR87_RS22660 0.34 -0.1
1,441,096 + ABZR87_RS22660 0.37 -0.3
1,441,096 + ABZR87_RS22660 0.37 +0.9
1,441,096 + ABZR87_RS22660 0.37 +0.4
1,441,097 - ABZR87_RS22660 0.37 +0.3
1,441,234 + ABZR87_RS22660 0.44 +2.0
1,441,235 - ABZR87_RS22660 0.44 -0.4
1,441,258 + ABZR87_RS22660 0.45 +0.6
1,441,258 + ABZR87_RS22660 0.45 +4.4
1,441,258 + ABZR87_RS22660 0.45 +1.9
1,441,259 - ABZR87_RS22660 0.45 -0.9
1,441,259 - ABZR87_RS22660 0.45 +0.6

Or see this region's nucleotide sequence