Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22045

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22040 and ABZR87_RS22045 are separated by 297 nucleotidesABZR87_RS22045 and ABZR87_RS22050 are separated by 155 nucleotides ABZR87_RS22040: ABZR87_RS22040 - S24 family peptidase, at 1,313,763 to 1,314,548 _RS22040 ABZR87_RS22045: ABZR87_RS22045 - GNAT family N-acetyltransferase, at 1,314,846 to 1,315,394 _RS22045 ABZR87_RS22050: ABZR87_RS22050 - DedA family protein/thiosulfate sulfurtransferase GlpE, at 1,315,550 to 1,316,527 _RS22050 Position (kb) 1314 1315 1316Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1314.698 kb on - strandat 1314.718 kb on - strandat 1314.896 kb on - strandat 1315.084 kb on + strand, within ABZR87_RS22045at 1315.084 kb on + strand, within ABZR87_RS22045at 1315.084 kb on + strand, within ABZR87_RS22045at 1315.084 kb on + strand, within ABZR87_RS22045at 1315.084 kb on + strand, within ABZR87_RS22045at 1315.084 kb on + strand, within ABZR87_RS22045at 1315.084 kb on + strand, within ABZR87_RS22045at 1315.085 kb on - strand, within ABZR87_RS22045at 1315.085 kb on - strand, within ABZR87_RS22045at 1315.085 kb on - strand, within ABZR87_RS22045at 1315.085 kb on - strand, within ABZR87_RS22045at 1315.112 kb on - strand, within ABZR87_RS22045at 1315.112 kb on - strand, within ABZR87_RS22045at 1315.141 kb on + strand, within ABZR87_RS22045at 1315.141 kb on + strand, within ABZR87_RS22045at 1315.142 kb on - strand, within ABZR87_RS22045at 1315.142 kb on - strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.183 kb on + strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.184 kb on - strand, within ABZR87_RS22045at 1315.271 kb on + strand, within ABZR87_RS22045at 1315.271 kb on + strand, within ABZR87_RS22045at 1315.272 kb on - strand, within ABZR87_RS22045at 1315.288 kb on + strand, within ABZR87_RS22045at 1315.288 kb on + strand, within ABZR87_RS22045at 1315.289 kb on - strand, within ABZR87_RS22045at 1315.292 kb on + strand, within ABZR87_RS22045at 1315.293 kb on - strand, within ABZR87_RS22045at 1315.293 kb on - strand, within ABZR87_RS22045at 1315.301 kb on + strand, within ABZR87_RS22045at 1315.370 kb on + strandat 1315.509 kb on + strandat 1315.691 kb on + strand, within ABZR87_RS22050at 1315.692 kb on - strand, within ABZR87_RS22050at 1315.692 kb on - strand, within ABZR87_RS22050at 1315.751 kb on + strand, within ABZR87_RS22050at 1315.752 kb on - strand, within ABZR87_RS22050at 1315.752 kb on - strand, within ABZR87_RS22050at 1315.804 kb on - strand, within ABZR87_RS22050at 1315.961 kb on + strand, within ABZR87_RS22050at 1315.962 kb on - strand, within ABZR87_RS22050at 1316.103 kb on + strand, within ABZR87_RS22050at 1316.103 kb on + strand, within ABZR87_RS22050at 1316.103 kb on + strand, within ABZR87_RS22050at 1316.103 kb on + strand, within ABZR87_RS22050at 1316.104 kb on - strand, within ABZR87_RS22050at 1316.104 kb on - strand, within ABZR87_RS22050at 1316.104 kb on - strand, within ABZR87_RS22050at 1316.104 kb on - strand, within ABZR87_RS22050at 1316.104 kb on - strand, within ABZR87_RS22050at 1316.104 kb on - strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.109 kb on + strand, within ABZR87_RS22050at 1316.110 kb on - strand, within ABZR87_RS22050at 1316.110 kb on - strand, within ABZR87_RS22050at 1316.110 kb on - strand, within ABZR87_RS22050at 1316.250 kb on + strand, within ABZR87_RS22050at 1316.250 kb on + strand, within ABZR87_RS22050at 1316.251 kb on - strand, within ABZR87_RS22050at 1316.251 kb on - strand, within ABZR87_RS22050at 1316.282 kb on + strand, within ABZR87_RS22050at 1316.282 kb on + strand, within ABZR87_RS22050at 1316.282 kb on + strand, within ABZR87_RS22050at 1316.282 kb on + strand, within ABZR87_RS22050at 1316.282 kb on + strand, within ABZR87_RS22050at 1316.283 kb on - strand, within ABZR87_RS22050at 1316.283 kb on - strand, within ABZR87_RS22050at 1316.283 kb on - strand, within ABZR87_RS22050at 1316.283 kb on - strand, within ABZR87_RS22050at 1316.283 kb on - strand, within ABZR87_RS22050at 1316.345 kb on + strand, within ABZR87_RS22050at 1316.345 kb on + strand, within ABZR87_RS22050at 1316.345 kb on + strand, within ABZR87_RS22050at 1316.345 kb on + strand, within ABZR87_RS22050at 1316.345 kb on + strand, within ABZR87_RS22050at 1316.346 kb on - strand, within ABZR87_RS22050at 1316.346 kb on - strand, within ABZR87_RS22050at 1316.346 kb on - strand, within ABZR87_RS22050

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,314,698 - -0.2
1,314,718 - -0.9
1,314,896 - -2.5
1,315,084 + ABZR87_RS22045 0.43 +0.9
1,315,084 + ABZR87_RS22045 0.43 +0.7
1,315,084 + ABZR87_RS22045 0.43 -0.2
1,315,084 + ABZR87_RS22045 0.43 +0.5
1,315,084 + ABZR87_RS22045 0.43 -2.3
1,315,084 + ABZR87_RS22045 0.43 -2.5
1,315,084 + ABZR87_RS22045 0.43 +1.4
1,315,085 - ABZR87_RS22045 0.44 +0.6
1,315,085 - ABZR87_RS22045 0.44 -0.5
1,315,085 - ABZR87_RS22045 0.44 -0.6
1,315,085 - ABZR87_RS22045 0.44 +0.1
1,315,112 - ABZR87_RS22045 0.48 -1.0
1,315,112 - ABZR87_RS22045 0.48 -1.0
1,315,141 + ABZR87_RS22045 0.54 -2.3
1,315,141 + ABZR87_RS22045 0.54 +0.3
1,315,142 - ABZR87_RS22045 0.54 +0.5
1,315,142 - ABZR87_RS22045 0.54 -0.9
1,315,183 + ABZR87_RS22045 0.61 +0.8
1,315,183 + ABZR87_RS22045 0.61 +0.1
1,315,183 + ABZR87_RS22045 0.61 +0.3
1,315,183 + ABZR87_RS22045 0.61 +1.4
1,315,183 + ABZR87_RS22045 0.61 -0.0
1,315,183 + ABZR87_RS22045 0.61 -0.6
1,315,183 + ABZR87_RS22045 0.61 +0.1
1,315,183 + ABZR87_RS22045 0.61 -0.9
1,315,183 + ABZR87_RS22045 0.61 -1.3
1,315,184 - ABZR87_RS22045 0.62 -1.5
1,315,184 - ABZR87_RS22045 0.62 -1.4
1,315,184 - ABZR87_RS22045 0.62 -0.7
1,315,184 - ABZR87_RS22045 0.62 -0.7
1,315,184 - ABZR87_RS22045 0.62 -0.4
1,315,184 - ABZR87_RS22045 0.62 -0.3
1,315,184 - ABZR87_RS22045 0.62 +0.8
1,315,184 - ABZR87_RS22045 0.62 +2.4
1,315,184 - ABZR87_RS22045 0.62 -0.3
1,315,271 + ABZR87_RS22045 0.77 -0.7
1,315,271 + ABZR87_RS22045 0.77 +1.2
1,315,272 - ABZR87_RS22045 0.78 -0.3
1,315,288 + ABZR87_RS22045 0.81 +0.8
1,315,288 + ABZR87_RS22045 0.81 -0.2
1,315,289 - ABZR87_RS22045 0.81 +0.3
1,315,292 + ABZR87_RS22045 0.81 -0.2
1,315,293 - ABZR87_RS22045 0.81 +0.3
1,315,293 - ABZR87_RS22045 0.81 -0.3
1,315,301 + ABZR87_RS22045 0.83 +0.4
1,315,370 + +0.2
1,315,509 + -1.8
1,315,691 + ABZR87_RS22050 0.14 +0.8
1,315,692 - ABZR87_RS22050 0.15 +0.3
1,315,692 - ABZR87_RS22050 0.15 -1.8
1,315,751 + ABZR87_RS22050 0.21 -0.8
1,315,752 - ABZR87_RS22050 0.21 -0.4
1,315,752 - ABZR87_RS22050 0.21 +0.2
1,315,804 - ABZR87_RS22050 0.26 -2.0
1,315,961 + ABZR87_RS22050 0.42 -1.3
1,315,962 - ABZR87_RS22050 0.42 +1.7
1,316,103 + ABZR87_RS22050 0.57 +0.2
1,316,103 + ABZR87_RS22050 0.57 +0.0
1,316,103 + ABZR87_RS22050 0.57 -1.3
1,316,103 + ABZR87_RS22050 0.57 +3.0
1,316,104 - ABZR87_RS22050 0.57 -1.7
1,316,104 - ABZR87_RS22050 0.57 -0.6
1,316,104 - ABZR87_RS22050 0.57 +0.5
1,316,104 - ABZR87_RS22050 0.57 +5.5
1,316,104 - ABZR87_RS22050 0.57 -0.6
1,316,104 - ABZR87_RS22050 0.57 -0.6
1,316,105 + ABZR87_RS22050 0.57 +0.0
1,316,105 + ABZR87_RS22050 0.57 +0.4
1,316,105 + ABZR87_RS22050 0.57 +0.0
1,316,105 + ABZR87_RS22050 0.57 -1.2
1,316,105 + ABZR87_RS22050 0.57 -0.5
1,316,105 + ABZR87_RS22050 0.57 -0.6
1,316,105 + ABZR87_RS22050 0.57 -1.4
1,316,105 + ABZR87_RS22050 0.57 +0.4
1,316,105 + ABZR87_RS22050 0.57 -0.7
1,316,105 + ABZR87_RS22050 0.57 -0.4
1,316,106 - ABZR87_RS22050 0.57 +0.1
1,316,106 - ABZR87_RS22050 0.57 +0.1
1,316,106 - ABZR87_RS22050 0.57 +0.9
1,316,106 - ABZR87_RS22050 0.57 -0.2
1,316,106 - ABZR87_RS22050 0.57 -0.8
1,316,106 - ABZR87_RS22050 0.57 -0.4
1,316,106 - ABZR87_RS22050 0.57 -0.7
1,316,106 - ABZR87_RS22050 0.57 +1.2
1,316,106 - ABZR87_RS22050 0.57 +0.4
1,316,109 + ABZR87_RS22050 0.57 +1.1
1,316,110 - ABZR87_RS22050 0.57 +0.1
1,316,110 - ABZR87_RS22050 0.57 +0.5
1,316,110 - ABZR87_RS22050 0.57 +0.5
1,316,250 + ABZR87_RS22050 0.72 -1.5
1,316,250 + ABZR87_RS22050 0.72 +0.1
1,316,251 - ABZR87_RS22050 0.72 +0.1
1,316,251 - ABZR87_RS22050 0.72 -0.5
1,316,282 + ABZR87_RS22050 0.75 +0.2
1,316,282 + ABZR87_RS22050 0.75 -0.4
1,316,282 + ABZR87_RS22050 0.75 -0.5
1,316,282 + ABZR87_RS22050 0.75 +1.7
1,316,282 + ABZR87_RS22050 0.75 +0.5
1,316,283 - ABZR87_RS22050 0.75 +0.4
1,316,283 - ABZR87_RS22050 0.75 -1.6
1,316,283 - ABZR87_RS22050 0.75 -1.2
1,316,283 - ABZR87_RS22050 0.75 +0.1
1,316,283 - ABZR87_RS22050 0.75 +0.4
1,316,345 + ABZR87_RS22050 0.81 +0.8
1,316,345 + ABZR87_RS22050 0.81 -0.2
1,316,345 + ABZR87_RS22050 0.81 +0.6
1,316,345 + ABZR87_RS22050 0.81 -0.4
1,316,345 + ABZR87_RS22050 0.81 -0.1
1,316,346 - ABZR87_RS22050 0.81 +0.8
1,316,346 - ABZR87_RS22050 0.81 -0.1
1,316,346 - ABZR87_RS22050 0.81 +1.2

Or see this region's nucleotide sequence