Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20625 and ABZR87_RS20630 are separated by 71 nucleotides ABZR87_RS20630 and ABZR87_RS20635 are separated by 176 nucleotides
ABZR87_RS20625: ABZR87_RS20625 - MFS transporter, at 1,015,014 to 1,016,417
_RS20625
ABZR87_RS20630: ABZR87_RS20630 - porin, at 1,016,489 to 1,017,589
_RS20630
ABZR87_RS20635: ABZR87_RS20635 - PDR/VanB family oxidoreductase, at 1,017,766 to 1,018,716
_RS20635
Position (kb) 1016
1017
1018 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1015.498 kb on + strand, within ABZR87_RS20625 at 1015.498 kb on + strand, within ABZR87_RS20625 at 1015.498 kb on + strand, within ABZR87_RS20625 at 1015.498 kb on + strand, within ABZR87_RS20625 at 1015.499 kb on - strand, within ABZR87_RS20625 at 1015.499 kb on - strand, within ABZR87_RS20625 at 1015.540 kb on + strand, within ABZR87_RS20625 at 1015.540 kb on + strand, within ABZR87_RS20625 at 1015.576 kb on - strand, within ABZR87_RS20625 at 1015.576 kb on - strand, within ABZR87_RS20625 at 1015.597 kb on + strand, within ABZR87_RS20625 at 1015.597 kb on + strand, within ABZR87_RS20625 at 1015.597 kb on + strand, within ABZR87_RS20625 at 1015.668 kb on - strand, within ABZR87_RS20625 at 1015.684 kb on - strand, within ABZR87_RS20625 at 1015.793 kb on + strand, within ABZR87_RS20625 at 1015.794 kb on - strand, within ABZR87_RS20625 at 1015.794 kb on - strand, within ABZR87_RS20625 at 1015.794 kb on - strand, within ABZR87_RS20625 at 1015.829 kb on - strand, within ABZR87_RS20625 at 1015.829 kb on - strand, within ABZR87_RS20625 at 1015.912 kb on + strand, within ABZR87_RS20625 at 1015.913 kb on - strand, within ABZR87_RS20625 at 1015.963 kb on + strand, within ABZR87_RS20625 at 1015.963 kb on + strand, within ABZR87_RS20625 at 1016.012 kb on + strand, within ABZR87_RS20625 at 1016.012 kb on + strand, within ABZR87_RS20625 at 1016.087 kb on + strand, within ABZR87_RS20625 at 1016.088 kb on - strand, within ABZR87_RS20625 at 1016.088 kb on - strand, within ABZR87_RS20625 at 1016.090 kb on - strand, within ABZR87_RS20625 at 1016.595 kb on + strand at 1016.595 kb on + strand at 1016.596 kb on - strand at 1016.596 kb on - strand at 1016.596 kb on - strand at 1016.596 kb on - strand at 1016.599 kb on + strand, within ABZR87_RS20630 at 1016.600 kb on - strand, within ABZR87_RS20630 at 1016.600 kb on - strand, within ABZR87_RS20630 at 1016.600 kb on - strand, within ABZR87_RS20630 at 1016.600 kb on - strand, within ABZR87_RS20630 at 1016.606 kb on + strand, within ABZR87_RS20630 at 1016.606 kb on + strand, within ABZR87_RS20630 at 1016.606 kb on + strand, within ABZR87_RS20630 at 1016.606 kb on + strand, within ABZR87_RS20630 at 1016.606 kb on + strand, within ABZR87_RS20630 at 1016.607 kb on - strand, within ABZR87_RS20630 at 1016.607 kb on - strand, within ABZR87_RS20630 at 1016.607 kb on - strand, within ABZR87_RS20630 at 1016.607 kb on - strand, within ABZR87_RS20630 at 1016.607 kb on - strand, within ABZR87_RS20630 at 1016.610 kb on + strand, within ABZR87_RS20630 at 1016.610 kb on + strand, within ABZR87_RS20630 at 1016.610 kb on + strand, within ABZR87_RS20630 at 1016.637 kb on + strand, within ABZR87_RS20630 at 1016.637 kb on + strand, within ABZR87_RS20630 at 1016.638 kb on - strand, within ABZR87_RS20630 at 1016.638 kb on - strand, within ABZR87_RS20630 at 1016.638 kb on - strand, within ABZR87_RS20630 at 1016.638 kb on - strand, within ABZR87_RS20630 at 1016.692 kb on + strand, within ABZR87_RS20630 at 1016.692 kb on + strand, within ABZR87_RS20630 at 1016.692 kb on + strand, within ABZR87_RS20630 at 1016.693 kb on - strand, within ABZR87_RS20630 at 1016.693 kb on - strand, within ABZR87_RS20630 at 1016.693 kb on - strand, within ABZR87_RS20630 at 1016.797 kb on + strand, within ABZR87_RS20630 at 1016.797 kb on + strand, within ABZR87_RS20630 at 1016.839 kb on - strand, within ABZR87_RS20630 at 1016.924 kb on - strand, within ABZR87_RS20630 at 1016.970 kb on + strand, within ABZR87_RS20630 at 1016.971 kb on - strand, within ABZR87_RS20630 at 1017.004 kb on - strand, within ABZR87_RS20630 at 1017.004 kb on - strand, within ABZR87_RS20630 at 1017.066 kb on + strand, within ABZR87_RS20630 at 1017.066 kb on + strand, within ABZR87_RS20630 at 1017.067 kb on - strand, within ABZR87_RS20630 at 1017.067 kb on - strand, within ABZR87_RS20630 at 1017.067 kb on - strand, within ABZR87_RS20630 at 1017.067 kb on - strand, within ABZR87_RS20630 at 1017.108 kb on + strand, within ABZR87_RS20630 at 1017.108 kb on + strand, within ABZR87_RS20630 at 1017.109 kb on - strand, within ABZR87_RS20630 at 1017.174 kb on + strand, within ABZR87_RS20630 at 1017.174 kb on + strand, within ABZR87_RS20630 at 1017.174 kb on + strand, within ABZR87_RS20630 at 1017.175 kb on - strand, within ABZR87_RS20630 at 1017.486 kb on + strand at 1017.486 kb on + strand at 1017.487 kb on - strand at 1017.752 kb on - strand at 1017.795 kb on + strand at 1017.795 kb on + strand at 1017.796 kb on - strand at 1018.026 kb on - strand, within ABZR87_RS20635 at 1018.039 kb on + strand, within ABZR87_RS20635 at 1018.040 kb on - strand, within ABZR87_RS20635 at 1018.072 kb on + strand, within ABZR87_RS20635 at 1018.091 kb on + strand, within ABZR87_RS20635 at 1018.091 kb on + strand, within ABZR87_RS20635 at 1018.151 kb on + strand, within ABZR87_RS20635 at 1018.151 kb on + strand, within ABZR87_RS20635 at 1018.152 kb on - strand, within ABZR87_RS20635 at 1018.152 kb on - strand, within ABZR87_RS20635 at 1018.162 kb on - strand, within ABZR87_RS20635 at 1018.298 kb on + strand, within ABZR87_RS20635 at 1018.298 kb on + strand, within ABZR87_RS20635 at 1018.299 kb on - strand, within ABZR87_RS20635 at 1018.299 kb on - strand, within ABZR87_RS20635 at 1018.299 kb on - strand, within ABZR87_RS20635 at 1018.475 kb on + strand, within ABZR87_RS20635 at 1018.475 kb on + strand, within ABZR87_RS20635 at 1018.476 kb on - strand, within ABZR87_RS20635 at 1018.524 kb on - strand, within ABZR87_RS20635 at 1018.524 kb on - strand, within ABZR87_RS20635 at 1018.559 kb on + strand, within ABZR87_RS20635 at 1018.559 kb on + strand, within ABZR87_RS20635 at 1018.560 kb on - strand, within ABZR87_RS20635 at 1018.560 kb on - strand, within ABZR87_RS20635
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 1,015,498 + ABZR87_RS20625 0.34 -1.6 1,015,498 + ABZR87_RS20625 0.34 +0.2 1,015,498 + ABZR87_RS20625 0.34 -1.9 1,015,498 + ABZR87_RS20625 0.34 +0.5 1,015,499 - ABZR87_RS20625 0.35 -1.0 1,015,499 - ABZR87_RS20625 0.35 +0.2 1,015,540 + ABZR87_RS20625 0.37 -1.4 1,015,540 + ABZR87_RS20625 0.37 -0.2 1,015,576 - ABZR87_RS20625 0.40 +1.1 1,015,576 - ABZR87_RS20625 0.40 -0.1 1,015,597 + ABZR87_RS20625 0.42 -1.2 1,015,597 + ABZR87_RS20625 0.42 -0.5 1,015,597 + ABZR87_RS20625 0.42 +0.8 1,015,668 - ABZR87_RS20625 0.47 +0.1 1,015,684 - ABZR87_RS20625 0.48 +0.2 1,015,793 + ABZR87_RS20625 0.55 +0.6 1,015,794 - ABZR87_RS20625 0.56 -0.6 1,015,794 - ABZR87_RS20625 0.56 +1.7 1,015,794 - ABZR87_RS20625 0.56 -0.2 1,015,829 - ABZR87_RS20625 0.58 -0.2 1,015,829 - ABZR87_RS20625 0.58 -1.5 1,015,912 + ABZR87_RS20625 0.64 -0.2 1,015,913 - ABZR87_RS20625 0.64 +2.2 1,015,963 + ABZR87_RS20625 0.68 -1.1 1,015,963 + ABZR87_RS20625 0.68 +0.4 1,016,012 + ABZR87_RS20625 0.71 -0.0 1,016,012 + ABZR87_RS20625 0.71 +0.6 1,016,087 + ABZR87_RS20625 0.76 +1.3 1,016,088 - ABZR87_RS20625 0.76 -1.0 1,016,088 - ABZR87_RS20625 0.76 -0.4 1,016,090 - ABZR87_RS20625 0.77 +1.2 1,016,595 + -0.6 1,016,595 + +1.0 1,016,596 - +1.3 1,016,596 - +0.4 1,016,596 - -1.0 1,016,596 - +0.7 1,016,599 + ABZR87_RS20630 0.10 +0.3 1,016,600 - ABZR87_RS20630 0.10 -0.7 1,016,600 - ABZR87_RS20630 0.10 +0.4 1,016,600 - ABZR87_RS20630 0.10 -2.5 1,016,600 - ABZR87_RS20630 0.10 -0.2 1,016,606 + ABZR87_RS20630 0.11 -2.1 1,016,606 + ABZR87_RS20630 0.11 +0.1 1,016,606 + ABZR87_RS20630 0.11 +0.3 1,016,606 + ABZR87_RS20630 0.11 -1.6 1,016,606 + ABZR87_RS20630 0.11 +1.1 1,016,607 - ABZR87_RS20630 0.11 -0.9 1,016,607 - ABZR87_RS20630 0.11 +2.1 1,016,607 - ABZR87_RS20630 0.11 +0.0 1,016,607 - ABZR87_RS20630 0.11 +0.2 1,016,607 - ABZR87_RS20630 0.11 +0.1 1,016,610 + ABZR87_RS20630 0.11 +3.6 1,016,610 + ABZR87_RS20630 0.11 +1.6 1,016,610 + ABZR87_RS20630 0.11 +0.3 1,016,637 + ABZR87_RS20630 0.13 -2.8 1,016,637 + ABZR87_RS20630 0.13 -0.6 1,016,638 - ABZR87_RS20630 0.14 +0.9 1,016,638 - ABZR87_RS20630 0.14 -1.7 1,016,638 - ABZR87_RS20630 0.14 +0.0 1,016,638 - ABZR87_RS20630 0.14 +2.3 1,016,692 + ABZR87_RS20630 0.18 +0.1 1,016,692 + ABZR87_RS20630 0.18 +0.7 1,016,692 + ABZR87_RS20630 0.18 -2.2 1,016,693 - ABZR87_RS20630 0.19 +0.6 1,016,693 - ABZR87_RS20630 0.19 +1.1 1,016,693 - ABZR87_RS20630 0.19 -0.7 1,016,797 + ABZR87_RS20630 0.28 -0.1 1,016,797 + ABZR87_RS20630 0.28 +0.3 1,016,839 - ABZR87_RS20630 0.32 +0.1 1,016,924 - ABZR87_RS20630 0.40 +0.8 1,016,970 + ABZR87_RS20630 0.44 +0.1 1,016,971 - ABZR87_RS20630 0.44 -0.7 1,017,004 - ABZR87_RS20630 0.47 +1.2 1,017,004 - ABZR87_RS20630 0.47 -0.3 1,017,066 + ABZR87_RS20630 0.52 -0.5 1,017,066 + ABZR87_RS20630 0.52 +1.0 1,017,067 - ABZR87_RS20630 0.52 -1.6 1,017,067 - ABZR87_RS20630 0.52 +0.4 1,017,067 - ABZR87_RS20630 0.52 +2.0 1,017,067 - ABZR87_RS20630 0.52 +0.9 1,017,108 + ABZR87_RS20630 0.56 +0.5 1,017,108 + ABZR87_RS20630 0.56 +0.9 1,017,109 - ABZR87_RS20630 0.56 -0.7 1,017,174 + ABZR87_RS20630 0.62 +0.3 1,017,174 + ABZR87_RS20630 0.62 -1.3 1,017,174 + ABZR87_RS20630 0.62 -0.2 1,017,175 - ABZR87_RS20630 0.62 -3.4 1,017,486 + +0.6 1,017,486 + -0.2 1,017,487 - -0.3 1,017,752 - +0.6 1,017,795 + -1.4 1,017,795 + -0.3 1,017,796 - +1.4 1,018,026 - ABZR87_RS20635 0.27 +0.6 1,018,039 + ABZR87_RS20635 0.29 +0.2 1,018,040 - ABZR87_RS20635 0.29 -1.7 1,018,072 + ABZR87_RS20635 0.32 +0.3 1,018,091 + ABZR87_RS20635 0.34 -2.6 1,018,091 + ABZR87_RS20635 0.34 +0.3 1,018,151 + ABZR87_RS20635 0.40 +1.5 1,018,151 + ABZR87_RS20635 0.40 -0.3 1,018,152 - ABZR87_RS20635 0.41 +0.6 1,018,152 - ABZR87_RS20635 0.41 -0.6 1,018,162 - ABZR87_RS20635 0.42 -1.9 1,018,298 + ABZR87_RS20635 0.56 -1.6 1,018,298 + ABZR87_RS20635 0.56 +0.9 1,018,299 - ABZR87_RS20635 0.56 +1.1 1,018,299 - ABZR87_RS20635 0.56 +0.9 1,018,299 - ABZR87_RS20635 0.56 -1.1 1,018,475 + ABZR87_RS20635 0.75 -0.5 1,018,475 + ABZR87_RS20635 0.75 +0.0 1,018,476 - ABZR87_RS20635 0.75 +1.5 1,018,524 - ABZR87_RS20635 0.80 -0.7 1,018,524 - ABZR87_RS20635 0.80 +1.1 1,018,559 + ABZR87_RS20635 0.83 +0.3 1,018,559 + ABZR87_RS20635 0.83 +2.9 1,018,560 - ABZR87_RS20635 0.83 +1.4 1,018,560 - ABZR87_RS20635 0.83 -2.7
Or see this region's nucleotide sequence