Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20205 and ABZR87_RS20210 are separated by 21 nucleotides ABZR87_RS20210 and ABZR87_RS20215 are separated by 39 nucleotides
ABZR87_RS20205: ABZR87_RS20205 - type VI secretion system Vgr family protein, at 917,152 to 919,911
_RS20205
ABZR87_RS20210: ABZR87_RS20210 - type VI secretion system ATPase TssH, at 919,933 to 922,656
_RS20210
ABZR87_RS20215: ABZR87_RS20215 - type VI secretion system baseplate subunit TssG, at 922,696 to 923,787
_RS20215
Position (kb) 919
920
921
922
923 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 919.034 kb on + strand, within ABZR87_RS20205 at 919.035 kb on - strand, within ABZR87_RS20205 at 919.035 kb on - strand, within ABZR87_RS20205 at 919.134 kb on - strand, within ABZR87_RS20205 at 919.154 kb on - strand, within ABZR87_RS20205 at 919.297 kb on + strand, within ABZR87_RS20205 at 919.340 kb on + strand, within ABZR87_RS20205 at 919.341 kb on - strand, within ABZR87_RS20205 at 919.341 kb on - strand, within ABZR87_RS20205 at 919.398 kb on - strand, within ABZR87_RS20205 at 919.424 kb on + strand, within ABZR87_RS20205 at 919.425 kb on - strand, within ABZR87_RS20205 at 919.696 kb on + strand at 919.753 kb on - strand at 919.753 kb on - strand at 919.879 kb on + strand at 919.879 kb on + strand at 919.879 kb on + strand at 919.879 kb on + strand at 919.880 kb on - strand at 919.880 kb on - strand at 919.880 kb on - strand at 919.934 kb on + strand at 919.934 kb on + strand at 919.935 kb on - strand at 919.935 kb on - strand at 919.935 kb on - strand at 919.946 kb on + strand at 920.178 kb on + strand at 920.234 kb on + strand, within ABZR87_RS20210 at 920.234 kb on + strand, within ABZR87_RS20210 at 920.234 kb on + strand, within ABZR87_RS20210 at 920.234 kb on + strand, within ABZR87_RS20210 at 920.235 kb on - strand, within ABZR87_RS20210 at 920.282 kb on + strand, within ABZR87_RS20210 at 920.282 kb on + strand, within ABZR87_RS20210 at 920.282 kb on + strand, within ABZR87_RS20210 at 920.283 kb on - strand, within ABZR87_RS20210 at 920.283 kb on - strand, within ABZR87_RS20210 at 920.570 kb on + strand, within ABZR87_RS20210 at 920.579 kb on + strand, within ABZR87_RS20210 at 920.579 kb on + strand, within ABZR87_RS20210 at 920.580 kb on - strand, within ABZR87_RS20210 at 920.628 kb on - strand, within ABZR87_RS20210 at 920.628 kb on - strand, within ABZR87_RS20210 at 920.654 kb on + strand, within ABZR87_RS20210 at 920.706 kb on + strand, within ABZR87_RS20210 at 921.429 kb on + strand, within ABZR87_RS20210 at 921.429 kb on + strand, within ABZR87_RS20210 at 921.430 kb on - strand, within ABZR87_RS20210 at 921.430 kb on - strand, within ABZR87_RS20210 at 921.430 kb on - strand, within ABZR87_RS20210 at 921.430 kb on - strand, within ABZR87_RS20210 at 921.431 kb on + strand, within ABZR87_RS20210 at 921.431 kb on + strand, within ABZR87_RS20210 at 921.431 kb on + strand, within ABZR87_RS20210 at 921.431 kb on + strand, within ABZR87_RS20210 at 921.431 kb on + strand, within ABZR87_RS20210 at 921.431 kb on + strand, within ABZR87_RS20210 at 921.432 kb on - strand, within ABZR87_RS20210 at 921.432 kb on - strand, within ABZR87_RS20210 at 921.432 kb on - strand, within ABZR87_RS20210 at 921.432 kb on - strand, within ABZR87_RS20210 at 921.432 kb on - strand, within ABZR87_RS20210 at 921.432 kb on - strand, within ABZR87_RS20210 at 921.432 kb on - strand, within ABZR87_RS20210 at 921.605 kb on + strand, within ABZR87_RS20210 at 921.605 kb on + strand, within ABZR87_RS20210 at 921.605 kb on + strand, within ABZR87_RS20210 at 921.605 kb on + strand, within ABZR87_RS20210 at 921.606 kb on - strand, within ABZR87_RS20210 at 921.606 kb on - strand, within ABZR87_RS20210 at 921.606 kb on - strand, within ABZR87_RS20210 at 921.606 kb on - strand, within ABZR87_RS20210 at 921.614 kb on + strand, within ABZR87_RS20210 at 921.615 kb on - strand, within ABZR87_RS20210 at 921.615 kb on - strand, within ABZR87_RS20210 at 921.941 kb on - strand, within ABZR87_RS20210 at 921.941 kb on - strand, within ABZR87_RS20210 at 921.941 kb on - strand, within ABZR87_RS20210 at 922.072 kb on + strand, within ABZR87_RS20210 at 922.072 kb on + strand, within ABZR87_RS20210 at 922.072 kb on + strand, within ABZR87_RS20210 at 922.073 kb on - strand, within ABZR87_RS20210 at 922.413 kb on + strand at 922.413 kb on + strand at 922.414 kb on - strand at 922.414 kb on - strand at 922.560 kb on - strand at 922.560 kb on - strand at 922.560 kb on - strand at 922.560 kb on - strand at 922.718 kb on + strand at 922.718 kb on + strand at 922.718 kb on + strand at 922.718 kb on + strand at 922.718 kb on + strand at 922.718 kb on + strand at 922.718 kb on + strand at 922.719 kb on - strand at 922.719 kb on - strand at 922.719 kb on - strand at 922.719 kb on - strand at 922.719 kb on - strand at 922.719 kb on - strand at 923.048 kb on + strand, within ABZR87_RS20215 at 923.049 kb on - strand, within ABZR87_RS20215 at 923.049 kb on - strand, within ABZR87_RS20215 at 923.114 kb on + strand, within ABZR87_RS20215 at 923.138 kb on + strand, within ABZR87_RS20215 at 923.177 kb on + strand, within ABZR87_RS20215 at 923.279 kb on + strand, within ABZR87_RS20215 at 923.279 kb on + strand, within ABZR87_RS20215 at 923.280 kb on - strand, within ABZR87_RS20215 at 923.280 kb on - strand, within ABZR87_RS20215 at 923.304 kb on - strand, within ABZR87_RS20215 at 923.321 kb on + strand, within ABZR87_RS20215 at 923.321 kb on + strand, within ABZR87_RS20215 at 923.339 kb on + strand, within ABZR87_RS20215 at 923.339 kb on + strand, within ABZR87_RS20215 at 923.339 kb on + strand, within ABZR87_RS20215 at 923.340 kb on - strand, within ABZR87_RS20215 at 923.430 kb on - strand, within ABZR87_RS20215 at 923.435 kb on + strand, within ABZR87_RS20215
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 919,034 + ABZR87_RS20205 0.68 +2.0 919,035 - ABZR87_RS20205 0.68 -0.1 919,035 - ABZR87_RS20205 0.68 +1.9 919,134 - ABZR87_RS20205 0.72 -1.6 919,154 - ABZR87_RS20205 0.73 -0.2 919,297 + ABZR87_RS20205 0.78 +1.9 919,340 + ABZR87_RS20205 0.79 +2.9 919,341 - ABZR87_RS20205 0.79 +0.5 919,341 - ABZR87_RS20205 0.79 +2.4 919,398 - ABZR87_RS20205 0.81 +1.8 919,424 + ABZR87_RS20205 0.82 -0.6 919,425 - ABZR87_RS20205 0.82 -0.6 919,696 + -0.4 919,753 - -1.0 919,753 - -0.1 919,879 + +0.3 919,879 + +2.9 919,879 + -1.6 919,879 + +0.1 919,880 - -0.6 919,880 - -0.3 919,880 - +2.0 919,934 + +0.7 919,934 + -1.3 919,935 - +0.0 919,935 - +0.8 919,935 - +7.9 919,946 + +0.8 920,178 + +0.4 920,234 + ABZR87_RS20210 0.11 +0.8 920,234 + ABZR87_RS20210 0.11 -1.7 920,234 + ABZR87_RS20210 0.11 -0.4 920,234 + ABZR87_RS20210 0.11 -0.6 920,235 - ABZR87_RS20210 0.11 +1.0 920,282 + ABZR87_RS20210 0.13 -0.2 920,282 + ABZR87_RS20210 0.13 -0.1 920,282 + ABZR87_RS20210 0.13 -0.6 920,283 - ABZR87_RS20210 0.13 -0.5 920,283 - ABZR87_RS20210 0.13 +1.2 920,570 + ABZR87_RS20210 0.23 -1.0 920,579 + ABZR87_RS20210 0.24 +0.9 920,579 + ABZR87_RS20210 0.24 -2.7 920,580 - ABZR87_RS20210 0.24 -0.1 920,628 - ABZR87_RS20210 0.26 +1.4 920,628 - ABZR87_RS20210 0.26 +0.4 920,654 + ABZR87_RS20210 0.26 +1.3 920,706 + ABZR87_RS20210 0.28 -0.6 921,429 + ABZR87_RS20210 0.55 -2.4 921,429 + ABZR87_RS20210 0.55 +0.8 921,430 - ABZR87_RS20210 0.55 -0.4 921,430 - ABZR87_RS20210 0.55 -0.7 921,430 - ABZR87_RS20210 0.55 -1.4 921,430 - ABZR87_RS20210 0.55 -0.7 921,431 + ABZR87_RS20210 0.55 -1.6 921,431 + ABZR87_RS20210 0.55 +0.2 921,431 + ABZR87_RS20210 0.55 -0.9 921,431 + ABZR87_RS20210 0.55 +2.5 921,431 + ABZR87_RS20210 0.55 +1.3 921,431 + ABZR87_RS20210 0.55 +0.1 921,432 - ABZR87_RS20210 0.55 +1.7 921,432 - ABZR87_RS20210 0.55 -0.5 921,432 - ABZR87_RS20210 0.55 +1.7 921,432 - ABZR87_RS20210 0.55 -0.6 921,432 - ABZR87_RS20210 0.55 +0.0 921,432 - ABZR87_RS20210 0.55 -1.7 921,432 - ABZR87_RS20210 0.55 +1.6 921,605 + ABZR87_RS20210 0.61 -2.3 921,605 + ABZR87_RS20210 0.61 +0.6 921,605 + ABZR87_RS20210 0.61 +0.6 921,605 + ABZR87_RS20210 0.61 -0.1 921,606 - ABZR87_RS20210 0.61 -0.3 921,606 - ABZR87_RS20210 0.61 -0.5 921,606 - ABZR87_RS20210 0.61 -0.6 921,606 - ABZR87_RS20210 0.61 -2.6 921,614 + ABZR87_RS20210 0.62 +1.1 921,615 - ABZR87_RS20210 0.62 +1.0 921,615 - ABZR87_RS20210 0.62 -0.3 921,941 - ABZR87_RS20210 0.74 -2.3 921,941 - ABZR87_RS20210 0.74 -1.3 921,941 - ABZR87_RS20210 0.74 +0.8 922,072 + ABZR87_RS20210 0.79 +0.1 922,072 + ABZR87_RS20210 0.79 -0.1 922,072 + ABZR87_RS20210 0.79 +0.3 922,073 - ABZR87_RS20210 0.79 +0.2 922,413 + +1.3 922,413 + -1.4 922,414 - -0.9 922,414 - -0.7 922,560 - -0.6 922,560 - -0.8 922,560 - -2.7 922,560 - +2.1 922,718 + -0.8 922,718 + +0.3 922,718 + -0.2 922,718 + -1.1 922,718 + +0.6 922,718 + -1.0 922,718 + -1.3 922,719 - +0.7 922,719 - -0.3 922,719 - +0.2 922,719 - -0.8 922,719 - +0.8 922,719 - +3.5 923,048 + ABZR87_RS20215 0.32 -0.3 923,049 - ABZR87_RS20215 0.32 -0.4 923,049 - ABZR87_RS20215 0.32 -0.3 923,114 + ABZR87_RS20215 0.38 -2.5 923,138 + ABZR87_RS20215 0.40 -0.8 923,177 + ABZR87_RS20215 0.44 -0.0 923,279 + ABZR87_RS20215 0.53 +1.4 923,279 + ABZR87_RS20215 0.53 +0.4 923,280 - ABZR87_RS20215 0.53 +0.1 923,280 - ABZR87_RS20215 0.53 -1.6 923,304 - ABZR87_RS20215 0.56 +1.4 923,321 + ABZR87_RS20215 0.57 +0.3 923,321 + ABZR87_RS20215 0.57 -0.2 923,339 + ABZR87_RS20215 0.59 -1.2 923,339 + ABZR87_RS20215 0.59 -0.6 923,339 + ABZR87_RS20215 0.59 -1.4 923,340 - ABZR87_RS20215 0.59 +0.5 923,430 - ABZR87_RS20215 0.67 +0.9 923,435 + ABZR87_RS20215 0.68 -0.2
Or see this region's nucleotide sequence