Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19785 and ABZR87_RS19790 are separated by 110 nucleotides ABZR87_RS19790 and ABZR87_RS19795 are separated by 165 nucleotides ABZR87_RS19795 and ABZR87_RS19800 are separated by 80 nucleotides
ABZR87_RS19785: ABZR87_RS19785 - cystathionine beta-lyase, at 810,846 to 812,024
_RS19785
ABZR87_RS19790: ABZR87_RS19790 - Lrp/AsnC family transcriptional regulator, at 812,135 to 812,611
_RS19790
ABZR87_RS19795: ABZR87_RS19795 - gamma-glutamyltransferase, at 812,777 to 814,486
_RS19795
ABZR87_RS19800: ABZR87_RS19800 - VOC family protein, at 814,567 to 815,640
_RS19800
Position (kb) 812
813
814
815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 811.793 kb on + strand, within ABZR87_RS19785 at 811.794 kb on - strand, within ABZR87_RS19785 at 811.861 kb on + strand, within ABZR87_RS19785 at 811.861 kb on + strand, within ABZR87_RS19785 at 811.861 kb on + strand, within ABZR87_RS19785 at 811.870 kb on + strand, within ABZR87_RS19785 at 811.870 kb on + strand, within ABZR87_RS19785 at 811.870 kb on + strand, within ABZR87_RS19785 at 811.871 kb on - strand, within ABZR87_RS19785 at 811.871 kb on - strand, within ABZR87_RS19785 at 811.871 kb on - strand, within ABZR87_RS19785 at 811.871 kb on - strand, within ABZR87_RS19785 at 811.871 kb on - strand, within ABZR87_RS19785 at 811.874 kb on + strand, within ABZR87_RS19785 at 811.874 kb on + strand, within ABZR87_RS19785 at 811.874 kb on + strand, within ABZR87_RS19785 at 811.874 kb on + strand, within ABZR87_RS19785 at 811.874 kb on + strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.875 kb on - strand, within ABZR87_RS19785 at 811.876 kb on + strand, within ABZR87_RS19785 at 811.877 kb on - strand, within ABZR87_RS19785 at 811.877 kb on - strand, within ABZR87_RS19785 at 812.062 kb on - strand at 812.204 kb on + strand, within ABZR87_RS19790 at 812.204 kb on + strand, within ABZR87_RS19790 at 812.205 kb on - strand, within ABZR87_RS19790 at 812.205 kb on - strand, within ABZR87_RS19790 at 812.205 kb on - strand, within ABZR87_RS19790 at 812.205 kb on - strand, within ABZR87_RS19790 at 812.244 kb on + strand, within ABZR87_RS19790 at 812.244 kb on + strand, within ABZR87_RS19790 at 812.245 kb on - strand, within ABZR87_RS19790 at 812.245 kb on - strand, within ABZR87_RS19790 at 812.245 kb on - strand, within ABZR87_RS19790 at 812.383 kb on + strand, within ABZR87_RS19790 at 812.441 kb on + strand, within ABZR87_RS19790 at 812.441 kb on + strand, within ABZR87_RS19790 at 812.442 kb on - strand, within ABZR87_RS19790 at 812.442 kb on - strand, within ABZR87_RS19790 at 812.442 kb on - strand, within ABZR87_RS19790 at 812.442 kb on - strand, within ABZR87_RS19790 at 812.444 kb on + strand, within ABZR87_RS19790 at 812.444 kb on + strand, within ABZR87_RS19790 at 812.444 kb on + strand, within ABZR87_RS19790 at 812.444 kb on + strand, within ABZR87_RS19790 at 812.445 kb on - strand, within ABZR87_RS19790 at 812.445 kb on - strand, within ABZR87_RS19790 at 812.501 kb on + strand, within ABZR87_RS19790 at 812.502 kb on - strand, within ABZR87_RS19790 at 812.502 kb on - strand, within ABZR87_RS19790 at 812.502 kb on - strand, within ABZR87_RS19790 at 812.649 kb on + strand at 812.663 kb on + strand at 812.663 kb on + strand at 812.663 kb on + strand at 812.663 kb on + strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.664 kb on - strand at 812.665 kb on + strand at 812.665 kb on + strand at 812.665 kb on + strand at 812.665 kb on + strand at 812.666 kb on - strand at 812.711 kb on + strand at 812.712 kb on - strand at 812.740 kb on + strand at 812.741 kb on - strand at 812.741 kb on - strand at 812.741 kb on - strand at 812.755 kb on + strand at 812.755 kb on + strand at 812.756 kb on - strand at 812.961 kb on - strand, within ABZR87_RS19795 at 812.961 kb on - strand, within ABZR87_RS19795 at 812.978 kb on + strand, within ABZR87_RS19795 at 812.979 kb on - strand, within ABZR87_RS19795 at 813.095 kb on + strand, within ABZR87_RS19795 at 813.095 kb on + strand, within ABZR87_RS19795 at 813.095 kb on + strand, within ABZR87_RS19795 at 813.096 kb on - strand, within ABZR87_RS19795 at 813.096 kb on - strand, within ABZR87_RS19795 at 813.096 kb on - strand, within ABZR87_RS19795 at 813.185 kb on + strand, within ABZR87_RS19795 at 813.185 kb on + strand, within ABZR87_RS19795 at 813.200 kb on + strand, within ABZR87_RS19795 at 813.200 kb on + strand, within ABZR87_RS19795 at 813.201 kb on - strand, within ABZR87_RS19795 at 813.443 kb on + strand, within ABZR87_RS19795 at 813.443 kb on + strand, within ABZR87_RS19795 at 813.443 kb on + strand, within ABZR87_RS19795 at 813.444 kb on - strand, within ABZR87_RS19795 at 813.444 kb on - strand, within ABZR87_RS19795 at 813.444 kb on - strand, within ABZR87_RS19795 at 813.524 kb on + strand, within ABZR87_RS19795 at 813.524 kb on + strand, within ABZR87_RS19795 at 813.524 kb on + strand, within ABZR87_RS19795 at 813.525 kb on - strand, within ABZR87_RS19795 at 813.525 kb on - strand, within ABZR87_RS19795 at 813.569 kb on + strand, within ABZR87_RS19795 at 813.569 kb on + strand, within ABZR87_RS19795 at 813.570 kb on - strand, within ABZR87_RS19795 at 813.570 kb on - strand, within ABZR87_RS19795 at 813.690 kb on - strand, within ABZR87_RS19795 at 813.716 kb on + strand, within ABZR87_RS19795 at 813.716 kb on + strand, within ABZR87_RS19795 at 813.716 kb on + strand, within ABZR87_RS19795 at 813.717 kb on - strand, within ABZR87_RS19795 at 813.717 kb on - strand, within ABZR87_RS19795 at 813.717 kb on - strand, within ABZR87_RS19795 at 813.717 kb on - strand, within ABZR87_RS19795 at 813.734 kb on + strand, within ABZR87_RS19795 at 813.734 kb on + strand, within ABZR87_RS19795 at 813.735 kb on - strand, within ABZR87_RS19795 at 813.735 kb on - strand, within ABZR87_RS19795 at 813.735 kb on - strand, within ABZR87_RS19795 at 813.791 kb on + strand, within ABZR87_RS19795 at 813.792 kb on - strand, within ABZR87_RS19795 at 813.894 kb on - strand, within ABZR87_RS19795 at 813.911 kb on + strand, within ABZR87_RS19795 at 813.911 kb on + strand, within ABZR87_RS19795 at 813.935 kb on + strand, within ABZR87_RS19795 at 813.935 kb on + strand, within ABZR87_RS19795 at 813.935 kb on + strand, within ABZR87_RS19795 at 814.044 kb on - strand, within ABZR87_RS19795 at 814.215 kb on - strand, within ABZR87_RS19795 at 814.215 kb on - strand, within ABZR87_RS19795 at 814.215 kb on - strand, within ABZR87_RS19795 at 814.296 kb on - strand, within ABZR87_RS19795 at 814.437 kb on - strand at 814.482 kb on - strand at 814.482 kb on - strand at 814.731 kb on - strand, within ABZR87_RS19800 at 814.790 kb on + strand, within ABZR87_RS19800 at 814.790 kb on + strand, within ABZR87_RS19800 at 814.790 kb on + strand, within ABZR87_RS19800 at 814.790 kb on + strand, within ABZR87_RS19800 at 814.790 kb on + strand, within ABZR87_RS19800 at 814.790 kb on + strand, within ABZR87_RS19800 at 814.791 kb on - strand, within ABZR87_RS19800 at 814.791 kb on - strand, within ABZR87_RS19800 at 814.793 kb on + strand, within ABZR87_RS19800 at 814.794 kb on - strand, within ABZR87_RS19800 at 814.794 kb on - strand, within ABZR87_RS19800 at 814.952 kb on + strand, within ABZR87_RS19800 at 814.952 kb on + strand, within ABZR87_RS19800 at 814.953 kb on - strand, within ABZR87_RS19800 at 815.064 kb on - strand, within ABZR87_RS19800 at 815.064 kb on - strand, within ABZR87_RS19800 at 815.198 kb on + strand, within ABZR87_RS19800 at 815.199 kb on - strand, within ABZR87_RS19800 at 815.199 kb on - strand, within ABZR87_RS19800 at 815.199 kb on - strand, within ABZR87_RS19800 at 815.199 kb on - strand, within ABZR87_RS19800 at 815.199 kb on - strand, within ABZR87_RS19800 at 815.271 kb on + strand, within ABZR87_RS19800 at 815.367 kb on - strand, within ABZR87_RS19800 at 815.420 kb on + strand, within ABZR87_RS19800 at 815.420 kb on + strand, within ABZR87_RS19800 at 815.420 kb on + strand, within ABZR87_RS19800 at 815.420 kb on + strand, within ABZR87_RS19800
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 811,793 + ABZR87_RS19785 0.80 -0.4 811,794 - ABZR87_RS19785 0.80 +2.1 811,861 + ABZR87_RS19785 0.86 +0.7 811,861 + ABZR87_RS19785 0.86 -0.0 811,861 + ABZR87_RS19785 0.86 +0.3 811,870 + ABZR87_RS19785 0.87 -0.7 811,870 + ABZR87_RS19785 0.87 -0.5 811,870 + ABZR87_RS19785 0.87 +0.6 811,871 - ABZR87_RS19785 0.87 -0.0 811,871 - ABZR87_RS19785 0.87 -2.6 811,871 - ABZR87_RS19785 0.87 -0.8 811,871 - ABZR87_RS19785 0.87 +0.9 811,871 - ABZR87_RS19785 0.87 +0.6 811,874 + ABZR87_RS19785 0.87 -1.0 811,874 + ABZR87_RS19785 0.87 +1.2 811,874 + ABZR87_RS19785 0.87 -0.1 811,874 + ABZR87_RS19785 0.87 -1.2 811,874 + ABZR87_RS19785 0.87 -0.2 811,875 - ABZR87_RS19785 0.87 +0.7 811,875 - ABZR87_RS19785 0.87 -0.1 811,875 - ABZR87_RS19785 0.87 -0.1 811,875 - ABZR87_RS19785 0.87 +0.8 811,875 - ABZR87_RS19785 0.87 -0.0 811,875 - ABZR87_RS19785 0.87 +0.5 811,876 + ABZR87_RS19785 0.87 +0.4 811,877 - ABZR87_RS19785 0.87 -1.5 811,877 - ABZR87_RS19785 0.87 +0.9 812,062 - -0.6 812,204 + ABZR87_RS19790 0.14 -1.7 812,204 + ABZR87_RS19790 0.14 -2.3 812,205 - ABZR87_RS19790 0.15 +0.1 812,205 - ABZR87_RS19790 0.15 -0.3 812,205 - ABZR87_RS19790 0.15 -1.7 812,205 - ABZR87_RS19790 0.15 +0.5 812,244 + ABZR87_RS19790 0.23 +1.0 812,244 + ABZR87_RS19790 0.23 -0.6 812,245 - ABZR87_RS19790 0.23 -2.1 812,245 - ABZR87_RS19790 0.23 +5.9 812,245 - ABZR87_RS19790 0.23 +0.3 812,383 + ABZR87_RS19790 0.52 +0.9 812,441 + ABZR87_RS19790 0.64 +2.1 812,441 + ABZR87_RS19790 0.64 -0.5 812,442 - ABZR87_RS19790 0.64 +0.7 812,442 - ABZR87_RS19790 0.64 +1.9 812,442 - ABZR87_RS19790 0.64 -1.5 812,442 - ABZR87_RS19790 0.64 -2.3 812,444 + ABZR87_RS19790 0.65 +0.4 812,444 + ABZR87_RS19790 0.65 +0.1 812,444 + ABZR87_RS19790 0.65 +3.9 812,444 + ABZR87_RS19790 0.65 -0.9 812,445 - ABZR87_RS19790 0.65 +0.8 812,445 - ABZR87_RS19790 0.65 +0.2 812,501 + ABZR87_RS19790 0.77 +0.0 812,502 - ABZR87_RS19790 0.77 +2.1 812,502 - ABZR87_RS19790 0.77 +0.4 812,502 - ABZR87_RS19790 0.77 -0.6 812,649 + +0.5 812,663 + -0.5 812,663 + -0.3 812,663 + +1.7 812,663 + -0.3 812,664 - +0.9 812,664 - -0.2 812,664 - -0.9 812,664 - +0.5 812,664 - +1.3 812,664 - -2.9 812,664 - +0.2 812,664 - +0.5 812,665 + +0.8 812,665 + -1.5 812,665 + -2.1 812,665 + +3.8 812,666 - -0.0 812,711 + +0.4 812,712 - -0.9 812,740 + -0.0 812,741 - -0.2 812,741 - -0.4 812,741 - +0.6 812,755 + +2.0 812,755 + -2.3 812,756 - +0.9 812,961 - ABZR87_RS19795 0.11 +1.6 812,961 - ABZR87_RS19795 0.11 +0.6 812,978 + ABZR87_RS19795 0.12 -0.3 812,979 - ABZR87_RS19795 0.12 +0.9 813,095 + ABZR87_RS19795 0.19 +0.2 813,095 + ABZR87_RS19795 0.19 -0.5 813,095 + ABZR87_RS19795 0.19 -0.4 813,096 - ABZR87_RS19795 0.19 -1.0 813,096 - ABZR87_RS19795 0.19 -0.9 813,096 - ABZR87_RS19795 0.19 +1.4 813,185 + ABZR87_RS19795 0.24 -0.3 813,185 + ABZR87_RS19795 0.24 -0.3 813,200 + ABZR87_RS19795 0.25 -1.2 813,200 + ABZR87_RS19795 0.25 -1.1 813,201 - ABZR87_RS19795 0.25 +0.1 813,443 + ABZR87_RS19795 0.39 +0.9 813,443 + ABZR87_RS19795 0.39 -0.1 813,443 + ABZR87_RS19795 0.39 -1.3 813,444 - ABZR87_RS19795 0.39 +0.2 813,444 - ABZR87_RS19795 0.39 +2.3 813,444 - ABZR87_RS19795 0.39 +0.4 813,524 + ABZR87_RS19795 0.44 -1.1 813,524 + ABZR87_RS19795 0.44 +0.4 813,524 + ABZR87_RS19795 0.44 +2.0 813,525 - ABZR87_RS19795 0.44 -0.1 813,525 - ABZR87_RS19795 0.44 -0.0 813,569 + ABZR87_RS19795 0.46 -1.7 813,569 + ABZR87_RS19795 0.46 -1.5 813,570 - ABZR87_RS19795 0.46 -0.3 813,570 - ABZR87_RS19795 0.46 -1.2 813,690 - ABZR87_RS19795 0.53 -1.1 813,716 + ABZR87_RS19795 0.55 +0.1 813,716 + ABZR87_RS19795 0.55 +0.1 813,716 + ABZR87_RS19795 0.55 +0.4 813,717 - ABZR87_RS19795 0.55 -1.9 813,717 - ABZR87_RS19795 0.55 -0.7 813,717 - ABZR87_RS19795 0.55 +0.3 813,717 - ABZR87_RS19795 0.55 -1.5 813,734 + ABZR87_RS19795 0.56 +2.0 813,734 + ABZR87_RS19795 0.56 -0.6 813,735 - ABZR87_RS19795 0.56 -0.9 813,735 - ABZR87_RS19795 0.56 +0.1 813,735 - ABZR87_RS19795 0.56 +0.9 813,791 + ABZR87_RS19795 0.59 -2.0 813,792 - ABZR87_RS19795 0.59 -0.3 813,894 - ABZR87_RS19795 0.65 -0.9 813,911 + ABZR87_RS19795 0.66 +0.1 813,911 + ABZR87_RS19795 0.66 +0.2 813,935 + ABZR87_RS19795 0.68 +0.8 813,935 + ABZR87_RS19795 0.68 -0.2 813,935 + ABZR87_RS19795 0.68 -1.9 814,044 - ABZR87_RS19795 0.74 +3.4 814,215 - ABZR87_RS19795 0.84 -1.6 814,215 - ABZR87_RS19795 0.84 -0.1 814,215 - ABZR87_RS19795 0.84 -0.1 814,296 - ABZR87_RS19795 0.89 +0.1 814,437 - +0.4 814,482 - -1.0 814,482 - +0.3 814,731 - ABZR87_RS19800 0.15 -1.4 814,790 + ABZR87_RS19800 0.21 -1.0 814,790 + ABZR87_RS19800 0.21 +0.5 814,790 + ABZR87_RS19800 0.21 +2.2 814,790 + ABZR87_RS19800 0.21 -1.4 814,790 + ABZR87_RS19800 0.21 +0.8 814,790 + ABZR87_RS19800 0.21 -0.9 814,791 - ABZR87_RS19800 0.21 +1.9 814,791 - ABZR87_RS19800 0.21 +0.1 814,793 + ABZR87_RS19800 0.21 +0.6 814,794 - ABZR87_RS19800 0.21 +2.8 814,794 - ABZR87_RS19800 0.21 -0.1 814,952 + ABZR87_RS19800 0.36 -1.5 814,952 + ABZR87_RS19800 0.36 +1.2 814,953 - ABZR87_RS19800 0.36 -0.5 815,064 - ABZR87_RS19800 0.46 +0.1 815,064 - ABZR87_RS19800 0.46 -0.8 815,198 + ABZR87_RS19800 0.59 -1.8 815,199 - ABZR87_RS19800 0.59 -0.6 815,199 - ABZR87_RS19800 0.59 -1.6 815,199 - ABZR87_RS19800 0.59 -0.0 815,199 - ABZR87_RS19800 0.59 -0.3 815,199 - ABZR87_RS19800 0.59 +0.3 815,271 + ABZR87_RS19800 0.66 -0.4 815,367 - ABZR87_RS19800 0.74 +1.3 815,420 + ABZR87_RS19800 0.79 -1.7 815,420 + ABZR87_RS19800 0.79 +0.9 815,420 + ABZR87_RS19800 0.79 +0.4 815,420 + ABZR87_RS19800 0.79 -2.2
Or see this region's nucleotide sequence