Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19670 and ABZR87_RS19675 are separated by 179 nucleotides ABZR87_RS19675 and ABZR87_RS19680 are separated by 350 nucleotides ABZR87_RS19680 and ABZR87_RS19685 are separated by 16 nucleotides ABZR87_RS19685 and ABZR87_RS19690 overlap by 4 nucleotides
ABZR87_RS19670: ABZR87_RS19670 - cold-shock protein, at 788,258 to 788,464
_RS19670
ABZR87_RS19675: ABZR87_RS19675 - cold-shock protein, at 788,644 to 788,847
_RS19675
ABZR87_RS19680: ABZR87_RS19680 - potassium transporter Kup, at 789,198 to 791,093
_RS19680
ABZR87_RS19685: ABZR87_RS19685 - formate dehydrogenase accessory sulfurtransferase FdhD, at 791,110 to 791,922
_RS19685
ABZR87_RS19690: ABZR87_RS19690 - hypothetical protein, at 791,919 to 792,164
_RS19690
Position (kb) 789
790
791
792 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 788.225 kb on - strand at 788.261 kb on + strand at 788.261 kb on + strand at 788.261 kb on + strand at 788.261 kb on + strand at 788.262 kb on - strand at 788.262 kb on - strand at 788.262 kb on - strand at 788.310 kb on - strand, within ABZR87_RS19670 at 788.380 kb on + strand, within ABZR87_RS19670 at 788.430 kb on + strand, within ABZR87_RS19670 at 788.430 kb on + strand, within ABZR87_RS19670 at 788.430 kb on + strand, within ABZR87_RS19670 at 788.430 kb on + strand, within ABZR87_RS19670 at 788.541 kb on + strand at 788.542 kb on - strand at 788.578 kb on + strand at 788.578 kb on + strand at 788.579 kb on - strand at 788.579 kb on - strand at 788.645 kb on + strand at 788.797 kb on - strand, within ABZR87_RS19675 at 788.841 kb on + strand at 788.841 kb on + strand at 788.841 kb on + strand at 788.842 kb on - strand at 788.873 kb on + strand at 788.893 kb on + strand at 788.893 kb on + strand at 788.894 kb on - strand at 788.946 kb on + strand at 788.946 kb on + strand at 788.946 kb on + strand at 788.946 kb on + strand at 788.946 kb on + strand at 788.946 kb on + strand at 788.947 kb on - strand at 788.947 kb on - strand at 788.947 kb on - strand at 788.947 kb on - strand at 788.947 kb on - strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 789.101 kb on - strand at 789.101 kb on - strand at 789.101 kb on - strand at 789.303 kb on + strand at 789.303 kb on + strand at 789.303 kb on + strand at 789.303 kb on + strand at 789.303 kb on + strand at 789.304 kb on - strand at 789.304 kb on - strand at 789.304 kb on - strand at 789.417 kb on + strand, within ABZR87_RS19680 at 789.417 kb on + strand, within ABZR87_RS19680 at 789.417 kb on + strand, within ABZR87_RS19680 at 789.417 kb on + strand, within ABZR87_RS19680 at 789.417 kb on + strand, within ABZR87_RS19680 at 789.418 kb on - strand, within ABZR87_RS19680 at 789.418 kb on - strand, within ABZR87_RS19680 at 789.418 kb on - strand, within ABZR87_RS19680 at 789.418 kb on - strand, within ABZR87_RS19680 at 789.418 kb on - strand, within ABZR87_RS19680 at 789.562 kb on - strand, within ABZR87_RS19680 at 789.562 kb on - strand, within ABZR87_RS19680 at 789.578 kb on + strand, within ABZR87_RS19680 at 789.578 kb on + strand, within ABZR87_RS19680 at 789.578 kb on + strand, within ABZR87_RS19680 at 789.579 kb on - strand, within ABZR87_RS19680 at 789.579 kb on - strand, within ABZR87_RS19680 at 789.579 kb on - strand, within ABZR87_RS19680 at 789.826 kb on - strand, within ABZR87_RS19680 at 789.826 kb on - strand, within ABZR87_RS19680 at 789.826 kb on - strand, within ABZR87_RS19680 at 789.826 kb on - strand, within ABZR87_RS19680 at 789.851 kb on + strand, within ABZR87_RS19680 at 789.852 kb on - strand, within ABZR87_RS19680 at 789.915 kb on + strand, within ABZR87_RS19680 at 789.915 kb on + strand, within ABZR87_RS19680 at 789.915 kb on + strand, within ABZR87_RS19680 at 789.915 kb on + strand, within ABZR87_RS19680 at 789.916 kb on - strand, within ABZR87_RS19680 at 789.916 kb on - strand, within ABZR87_RS19680 at 789.966 kb on + strand, within ABZR87_RS19680 at 789.966 kb on + strand, within ABZR87_RS19680 at 789.966 kb on + strand, within ABZR87_RS19680 at 789.967 kb on - strand, within ABZR87_RS19680 at 789.967 kb on - strand, within ABZR87_RS19680 at 789.967 kb on - strand, within ABZR87_RS19680 at 789.967 kb on - strand, within ABZR87_RS19680 at 789.967 kb on - strand, within ABZR87_RS19680 at 789.967 kb on - strand, within ABZR87_RS19680 at 789.967 kb on - strand, within ABZR87_RS19680 at 789.967 kb on - strand, within ABZR87_RS19680 at 789.996 kb on + strand, within ABZR87_RS19680 at 789.996 kb on + strand, within ABZR87_RS19680 at 789.996 kb on + strand, within ABZR87_RS19680 at 789.996 kb on + strand, within ABZR87_RS19680 at 790.203 kb on + strand, within ABZR87_RS19680 at 790.203 kb on + strand, within ABZR87_RS19680 at 790.204 kb on - strand, within ABZR87_RS19680 at 790.204 kb on - strand, within ABZR87_RS19680 at 790.204 kb on - strand, within ABZR87_RS19680 at 790.233 kb on + strand, within ABZR87_RS19680 at 790.233 kb on + strand, within ABZR87_RS19680 at 790.233 kb on + strand, within ABZR87_RS19680 at 790.233 kb on + strand, within ABZR87_RS19680 at 790.234 kb on - strand, within ABZR87_RS19680 at 790.234 kb on - strand, within ABZR87_RS19680 at 790.234 kb on - strand, within ABZR87_RS19680 at 790.234 kb on - strand, within ABZR87_RS19680 at 790.251 kb on + strand, within ABZR87_RS19680 at 790.251 kb on + strand, within ABZR87_RS19680 at 790.251 kb on + strand, within ABZR87_RS19680 at 790.251 kb on + strand, within ABZR87_RS19680 at 790.251 kb on + strand, within ABZR87_RS19680 at 790.251 kb on + strand, within ABZR87_RS19680 at 790.251 kb on + strand, within ABZR87_RS19680 at 790.251 kb on + strand, within ABZR87_RS19680 at 790.251 kb on + strand, within ABZR87_RS19680 at 790.252 kb on - strand, within ABZR87_RS19680 at 790.252 kb on - strand, within ABZR87_RS19680 at 790.252 kb on - strand, within ABZR87_RS19680 at 790.252 kb on - strand, within ABZR87_RS19680 at 790.252 kb on - strand, within ABZR87_RS19680 at 790.252 kb on - strand, within ABZR87_RS19680 at 790.320 kb on + strand, within ABZR87_RS19680 at 790.320 kb on + strand, within ABZR87_RS19680 at 790.325 kb on + strand, within ABZR87_RS19680 at 790.325 kb on + strand, within ABZR87_RS19680 at 790.325 kb on + strand, within ABZR87_RS19680 at 790.544 kb on + strand, within ABZR87_RS19680 at 790.544 kb on + strand, within ABZR87_RS19680 at 790.633 kb on - strand, within ABZR87_RS19680 at 790.633 kb on - strand, within ABZR87_RS19680 at 790.633 kb on - strand, within ABZR87_RS19680 at 790.656 kb on + strand, within ABZR87_RS19680 at 790.656 kb on + strand, within ABZR87_RS19680 at 790.656 kb on + strand, within ABZR87_RS19680 at 790.657 kb on - strand, within ABZR87_RS19680 at 790.770 kb on + strand, within ABZR87_RS19680 at 790.770 kb on + strand, within ABZR87_RS19680 at 790.770 kb on + strand, within ABZR87_RS19680 at 790.770 kb on + strand, within ABZR87_RS19680 at 790.770 kb on + strand, within ABZR87_RS19680 at 790.770 kb on + strand, within ABZR87_RS19680 at 790.771 kb on - strand, within ABZR87_RS19680 at 790.771 kb on - strand, within ABZR87_RS19680 at 790.916 kb on + strand at 790.916 kb on + strand at 790.916 kb on + strand at 790.917 kb on - strand at 791.091 kb on + strand at 791.091 kb on + strand at 791.091 kb on + strand at 791.092 kb on - strand at 791.092 kb on - strand at 791.131 kb on - strand at 791.259 kb on - strand, within ABZR87_RS19685 at 791.259 kb on - strand, within ABZR87_RS19685 at 791.427 kb on + strand, within ABZR87_RS19685 at 791.427 kb on + strand, within ABZR87_RS19685 at 791.427 kb on + strand, within ABZR87_RS19685 at 791.427 kb on + strand, within ABZR87_RS19685 at 791.428 kb on - strand, within ABZR87_RS19685 at 791.428 kb on - strand, within ABZR87_RS19685 at 791.428 kb on - strand, within ABZR87_RS19685
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 788,225 - +0.0 788,261 + -0.5 788,261 + +0.4 788,261 + -0.4 788,261 + +0.7 788,262 - -0.1 788,262 - -0.3 788,262 - +0.8 788,310 - ABZR87_RS19670 0.25 -0.1 788,380 + ABZR87_RS19670 0.59 -0.6 788,430 + ABZR87_RS19670 0.83 -0.4 788,430 + ABZR87_RS19670 0.83 -0.9 788,430 + ABZR87_RS19670 0.83 +0.3 788,430 + ABZR87_RS19670 0.83 +0.4 788,541 + +0.4 788,542 - +0.8 788,578 + +0.9 788,578 + +3.0 788,579 - +0.5 788,579 - +1.4 788,645 + +0.2 788,797 - ABZR87_RS19675 0.75 +0.6 788,841 + +1.6 788,841 + +0.3 788,841 + -0.5 788,842 - +0.5 788,873 + +2.3 788,893 + -3.7 788,893 + -2.4 788,894 - -1.7 788,946 + -1.7 788,946 + -0.4 788,946 + -0.7 788,946 + +0.5 788,946 + -0.8 788,946 + -1.5 788,947 - -0.7 788,947 - -2.8 788,947 - -1.9 788,947 - -0.6 788,947 - -1.3 788,948 + -2.7 788,948 + +2.1 788,948 + -1.0 788,948 + -1.0 788,948 + +4.0 788,948 + -0.7 788,948 + +1.1 788,948 + -1.3 788,949 - +0.6 788,949 - -0.7 788,949 - -1.0 788,949 - +0.5 788,949 - -0.3 788,949 - -0.5 788,949 - -2.0 788,949 - +0.1 788,949 - -0.5 789,101 - -2.5 789,101 - -0.2 789,101 - +0.6 789,303 + -1.6 789,303 + -1.9 789,303 + +1.9 789,303 + -2.0 789,303 + -0.9 789,304 - -0.6 789,304 - +2.4 789,304 - -0.7 789,417 + ABZR87_RS19680 0.12 -1.1 789,417 + ABZR87_RS19680 0.12 -1.1 789,417 + ABZR87_RS19680 0.12 +0.0 789,417 + ABZR87_RS19680 0.12 +1.8 789,417 + ABZR87_RS19680 0.12 -2.3 789,418 - ABZR87_RS19680 0.12 +0.3 789,418 - ABZR87_RS19680 0.12 +1.1 789,418 - ABZR87_RS19680 0.12 +0.3 789,418 - ABZR87_RS19680 0.12 -0.2 789,418 - ABZR87_RS19680 0.12 -0.7 789,562 - ABZR87_RS19680 0.19 -1.6 789,562 - ABZR87_RS19680 0.19 -2.5 789,578 + ABZR87_RS19680 0.20 -1.9 789,578 + ABZR87_RS19680 0.20 +0.3 789,578 + ABZR87_RS19680 0.20 -1.0 789,579 - ABZR87_RS19680 0.20 -2.7 789,579 - ABZR87_RS19680 0.20 -0.9 789,579 - ABZR87_RS19680 0.20 +0.0 789,826 - ABZR87_RS19680 0.33 -0.8 789,826 - ABZR87_RS19680 0.33 +0.5 789,826 - ABZR87_RS19680 0.33 -2.2 789,826 - ABZR87_RS19680 0.33 -1.0 789,851 + ABZR87_RS19680 0.34 -1.3 789,852 - ABZR87_RS19680 0.34 -0.6 789,915 + ABZR87_RS19680 0.38 -0.8 789,915 + ABZR87_RS19680 0.38 -2.4 789,915 + ABZR87_RS19680 0.38 -2.2 789,915 + ABZR87_RS19680 0.38 -2.8 789,916 - ABZR87_RS19680 0.38 -1.2 789,916 - ABZR87_RS19680 0.38 -0.3 789,966 + ABZR87_RS19680 0.41 +0.4 789,966 + ABZR87_RS19680 0.41 -1.4 789,966 + ABZR87_RS19680 0.41 -1.3 789,967 - ABZR87_RS19680 0.41 -1.0 789,967 - ABZR87_RS19680 0.41 -3.9 789,967 - ABZR87_RS19680 0.41 -0.9 789,967 - ABZR87_RS19680 0.41 -2.2 789,967 - ABZR87_RS19680 0.41 -2.1 789,967 - ABZR87_RS19680 0.41 -1.0 789,967 - ABZR87_RS19680 0.41 +1.8 789,967 - ABZR87_RS19680 0.41 +1.1 789,996 + ABZR87_RS19680 0.42 -0.2 789,996 + ABZR87_RS19680 0.42 -2.3 789,996 + ABZR87_RS19680 0.42 -0.8 789,996 + ABZR87_RS19680 0.42 +0.3 790,203 + ABZR87_RS19680 0.53 -1.7 790,203 + ABZR87_RS19680 0.53 -1.6 790,204 - ABZR87_RS19680 0.53 -2.6 790,204 - ABZR87_RS19680 0.53 -0.8 790,204 - ABZR87_RS19680 0.53 -2.4 790,233 + ABZR87_RS19680 0.55 -0.6 790,233 + ABZR87_RS19680 0.55 -1.0 790,233 + ABZR87_RS19680 0.55 -1.1 790,233 + ABZR87_RS19680 0.55 -0.2 790,234 - ABZR87_RS19680 0.55 -1.9 790,234 - ABZR87_RS19680 0.55 +0.4 790,234 - ABZR87_RS19680 0.55 -0.2 790,234 - ABZR87_RS19680 0.55 -2.7 790,251 + ABZR87_RS19680 0.56 -0.8 790,251 + ABZR87_RS19680 0.56 -2.0 790,251 + ABZR87_RS19680 0.56 -2.3 790,251 + ABZR87_RS19680 0.56 +0.6 790,251 + ABZR87_RS19680 0.56 +1.3 790,251 + ABZR87_RS19680 0.56 -1.1 790,251 + ABZR87_RS19680 0.56 +0.1 790,251 + ABZR87_RS19680 0.56 -1.0 790,251 + ABZR87_RS19680 0.56 +0.7 790,252 - ABZR87_RS19680 0.56 -1.6 790,252 - ABZR87_RS19680 0.56 -2.0 790,252 - ABZR87_RS19680 0.56 -1.0 790,252 - ABZR87_RS19680 0.56 +1.5 790,252 - ABZR87_RS19680 0.56 -2.4 790,252 - ABZR87_RS19680 0.56 -1.7 790,320 + ABZR87_RS19680 0.59 -1.2 790,320 + ABZR87_RS19680 0.59 -1.1 790,325 + ABZR87_RS19680 0.59 -0.2 790,325 + ABZR87_RS19680 0.59 -0.5 790,325 + ABZR87_RS19680 0.59 -0.1 790,544 + ABZR87_RS19680 0.71 -0.0 790,544 + ABZR87_RS19680 0.71 -1.0 790,633 - ABZR87_RS19680 0.76 -1.1 790,633 - ABZR87_RS19680 0.76 -1.5 790,633 - ABZR87_RS19680 0.76 -3.3 790,656 + ABZR87_RS19680 0.77 -0.3 790,656 + ABZR87_RS19680 0.77 -0.8 790,656 + ABZR87_RS19680 0.77 +0.7 790,657 - ABZR87_RS19680 0.77 -2.5 790,770 + ABZR87_RS19680 0.83 -1.2 790,770 + ABZR87_RS19680 0.83 +0.0 790,770 + ABZR87_RS19680 0.83 -2.2 790,770 + ABZR87_RS19680 0.83 -1.2 790,770 + ABZR87_RS19680 0.83 -2.2 790,770 + ABZR87_RS19680 0.83 -0.3 790,771 - ABZR87_RS19680 0.83 -1.6 790,771 - ABZR87_RS19680 0.83 -0.8 790,916 + -1.4 790,916 + -0.4 790,916 + +1.0 790,917 - -0.4 791,091 + -0.9 791,091 + -1.4 791,091 + -1.7 791,092 - +0.5 791,092 - -0.0 791,131 - +1.2 791,259 - ABZR87_RS19685 0.18 +2.5 791,259 - ABZR87_RS19685 0.18 -2.0 791,427 + ABZR87_RS19685 0.39 +0.2 791,427 + ABZR87_RS19685 0.39 +1.0 791,427 + ABZR87_RS19685 0.39 -1.7 791,427 + ABZR87_RS19685 0.39 +0.0 791,428 - ABZR87_RS19685 0.39 -3.3 791,428 - ABZR87_RS19685 0.39 +1.0 791,428 - ABZR87_RS19685 0.39 -0.7
Or see this region's nucleotide sequence