Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19595

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS19585 and ABZR87_RS19590 are separated by 170 nucleotidesABZR87_RS19590 and ABZR87_RS19595 are separated by 59 nucleotidesABZR87_RS19595 and ABZR87_RS19600 are separated by 152 nucleotidesABZR87_RS19600 and ABZR87_RS19605 are separated by 48 nucleotides ABZR87_RS19585: ABZR87_RS19585 - cytochrome P450, at 765,935 to 769,174 _RS19585 ABZR87_RS19590: ABZR87_RS19590 - hypothetical protein, at 769,345 to 769,635 _RS19590 ABZR87_RS19595: ABZR87_RS19595 - Gfo/Idh/MocA family oxidoreductase, at 769,695 to 770,849 _RS19595 ABZR87_RS19600: ABZR87_RS19600 - antibiotic biosynthesis monooxygenase, at 771,002 to 771,346 _RS19600 ABZR87_RS19605: ABZR87_RS19605 - cytochrome P450, at 771,395 to 772,528 _RS19605 Position (kb) 769 770 771Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 768.864 kb on - strandat 768.921 kb on - strandat 768.986 kb on - strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.020 kb on - strandat 769.020 kb on - strandat 769.020 kb on - strandat 769.020 kb on - strandat 769.020 kb on - strandat 769.020 kb on - strandat 769.020 kb on - strandat 769.020 kb on - strandat 769.020 kb on - strandat 769.020 kb on - strandat 769.020 kb on - strandat 769.408 kb on + strand, within ABZR87_RS19590at 769.409 kb on - strand, within ABZR87_RS19590at 769.409 kb on - strand, within ABZR87_RS19590at 769.409 kb on - strand, within ABZR87_RS19590at 769.420 kb on + strand, within ABZR87_RS19590at 769.420 kb on + strand, within ABZR87_RS19590at 769.423 kb on - strand, within ABZR87_RS19590at 769.633 kb on + strandat 769.633 kb on + strandat 769.633 kb on + strandat 769.696 kb on + strandat 769.697 kb on - strandat 769.921 kb on + strand, within ABZR87_RS19595at 769.921 kb on + strand, within ABZR87_RS19595at 769.921 kb on + strand, within ABZR87_RS19595at 769.921 kb on + strand, within ABZR87_RS19595at 769.921 kb on + strand, within ABZR87_RS19595at 769.921 kb on + strand, within ABZR87_RS19595at 769.921 kb on + strand, within ABZR87_RS19595at 769.922 kb on - strand, within ABZR87_RS19595at 769.922 kb on - strand, within ABZR87_RS19595at 769.996 kb on + strand, within ABZR87_RS19595at 769.997 kb on - strand, within ABZR87_RS19595at 770.090 kb on - strand, within ABZR87_RS19595at 770.245 kb on + strand, within ABZR87_RS19595at 770.245 kb on + strand, within ABZR87_RS19595at 770.246 kb on - strand, within ABZR87_RS19595at 770.246 kb on - strand, within ABZR87_RS19595at 770.278 kb on + strand, within ABZR87_RS19595at 770.279 kb on - strand, within ABZR87_RS19595at 770.539 kb on + strand, within ABZR87_RS19595at 770.540 kb on - strand, within ABZR87_RS19595at 770.540 kb on - strand, within ABZR87_RS19595at 770.540 kb on - strand, within ABZR87_RS19595at 770.572 kb on + strand, within ABZR87_RS19595at 770.611 kb on + strand, within ABZR87_RS19595at 770.611 kb on + strand, within ABZR87_RS19595at 770.611 kb on + strand, within ABZR87_RS19595at 770.612 kb on - strand, within ABZR87_RS19595at 770.612 kb on - strand, within ABZR87_RS19595at 770.612 kb on - strand, within ABZR87_RS19595at 770.620 kb on + strand, within ABZR87_RS19595at 770.773 kb on + strandat 770.774 kb on - strandat 770.795 kb on + strandat 770.844 kb on - strandat 770.933 kb on - strandat 771.294 kb on + strand, within ABZR87_RS19600at 771.294 kb on + strand, within ABZR87_RS19600at 771.294 kb on + strand, within ABZR87_RS19600at 771.295 kb on - strand, within ABZR87_RS19600at 771.295 kb on - strand, within ABZR87_RS19600at 771.295 kb on - strand, within ABZR87_RS19600at 771.438 kb on + strandat 771.438 kb on + strandat 771.605 kb on + strand, within ABZR87_RS19605at 771.605 kb on + strand, within ABZR87_RS19605at 771.701 kb on - strand, within ABZR87_RS19605

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
remove
768,864 - -1.9
768,921 - -2.2
768,986 - -0.0
769,019 + +0.7
769,019 + +2.8
769,019 + -0.3
769,019 + -0.3
769,019 + -0.6
769,019 + +0.8
769,019 + -1.3
769,019 + +1.7
769,019 + +0.5
769,019 + +0.8
769,019 + +0.2
769,019 + +0.3
769,019 + -1.2
769,020 - -0.2
769,020 - -2.9
769,020 - +4.7
769,020 - +1.8
769,020 - -0.3
769,020 - -1.0
769,020 - -2.5
769,020 - -1.1
769,020 - +1.0
769,020 - -1.0
769,020 - -0.3
769,408 + ABZR87_RS19590 0.22 -1.3
769,409 - ABZR87_RS19590 0.22 +0.8
769,409 - ABZR87_RS19590 0.22 -0.6
769,409 - ABZR87_RS19590 0.22 +0.0
769,420 + ABZR87_RS19590 0.26 -0.1
769,420 + ABZR87_RS19590 0.26 -0.6
769,423 - ABZR87_RS19590 0.27 +0.0
769,633 + +0.7
769,633 + -0.0
769,633 + -1.1
769,696 + -0.1
769,697 - -0.6
769,921 + ABZR87_RS19595 0.20 -1.2
769,921 + ABZR87_RS19595 0.20 +0.2
769,921 + ABZR87_RS19595 0.20 -1.8
769,921 + ABZR87_RS19595 0.20 +0.5
769,921 + ABZR87_RS19595 0.20 +3.5
769,921 + ABZR87_RS19595 0.20 +0.4
769,921 + ABZR87_RS19595 0.20 -1.7
769,922 - ABZR87_RS19595 0.20 +0.6
769,922 - ABZR87_RS19595 0.20 +1.9
769,996 + ABZR87_RS19595 0.26 +0.3
769,997 - ABZR87_RS19595 0.26 +1.1
770,090 - ABZR87_RS19595 0.34 +0.0
770,245 + ABZR87_RS19595 0.48 +0.2
770,245 + ABZR87_RS19595 0.48 +0.1
770,246 - ABZR87_RS19595 0.48 +0.4
770,246 - ABZR87_RS19595 0.48 +4.7
770,278 + ABZR87_RS19595 0.50 +0.3
770,279 - ABZR87_RS19595 0.51 -1.5
770,539 + ABZR87_RS19595 0.73 -0.5
770,540 - ABZR87_RS19595 0.73 +1.3
770,540 - ABZR87_RS19595 0.73 -0.1
770,540 - ABZR87_RS19595 0.73 -0.2
770,572 + ABZR87_RS19595 0.76 -0.1
770,611 + ABZR87_RS19595 0.79 -0.1
770,611 + ABZR87_RS19595 0.79 +0.6
770,611 + ABZR87_RS19595 0.79 +1.4
770,612 - ABZR87_RS19595 0.79 -0.5
770,612 - ABZR87_RS19595 0.79 +0.7
770,612 - ABZR87_RS19595 0.79 -0.2
770,620 + ABZR87_RS19595 0.80 +1.8
770,773 + -0.6
770,774 - +0.2
770,795 + +3.1
770,844 - -1.0
770,933 - +0.7
771,294 + ABZR87_RS19600 0.85 +1.0
771,294 + ABZR87_RS19600 0.85 +0.2
771,294 + ABZR87_RS19600 0.85 -0.0
771,295 - ABZR87_RS19600 0.85 -0.8
771,295 - ABZR87_RS19600 0.85 +0.8
771,295 - ABZR87_RS19600 0.85 -1.2
771,438 + +1.9
771,438 + -1.2
771,605 + ABZR87_RS19605 0.19 -2.4
771,605 + ABZR87_RS19605 0.19 +0.2
771,701 - ABZR87_RS19605 0.27 +0.3

Or see this region's nucleotide sequence