Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19200 and ABZR87_RS19205 are separated by 62 nucleotides ABZR87_RS19205 and ABZR87_RS19210 overlap by 4 nucleotides
ABZR87_RS19200: ABZR87_RS19200 - AraC family transcriptional regulator, at 670,661 to 671,578
_RS19200
ABZR87_RS19205: ABZR87_RS19205 - hypothetical protein, at 671,641 to 672,072
_RS19205
ABZR87_RS19210: ABZR87_RS19210 - glycoprotein, at 672,069 to 672,461
_RS19210
Position (kb) 671
672
673 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 671.040 kb on + strand, within ABZR87_RS19200 at 671.040 kb on + strand, within ABZR87_RS19200 at 671.040 kb on + strand, within ABZR87_RS19200 at 671.040 kb on + strand, within ABZR87_RS19200 at 671.040 kb on + strand, within ABZR87_RS19200 at 671.041 kb on - strand, within ABZR87_RS19200 at 671.041 kb on - strand, within ABZR87_RS19200 at 671.149 kb on + strand, within ABZR87_RS19200 at 671.236 kb on - strand, within ABZR87_RS19200 at 671.236 kb on - strand, within ABZR87_RS19200 at 671.236 kb on - strand, within ABZR87_RS19200 at 671.236 kb on - strand, within ABZR87_RS19200 at 671.333 kb on + strand, within ABZR87_RS19200 at 671.333 kb on + strand, within ABZR87_RS19200 at 671.333 kb on + strand, within ABZR87_RS19200 at 671.334 kb on - strand, within ABZR87_RS19200 at 671.334 kb on - strand, within ABZR87_RS19200 at 671.355 kb on + strand, within ABZR87_RS19200 at 671.371 kb on - strand, within ABZR87_RS19200 at 671.371 kb on - strand, within ABZR87_RS19200 at 671.404 kb on - strand, within ABZR87_RS19200 at 671.404 kb on - strand, within ABZR87_RS19200 at 671.404 kb on - strand, within ABZR87_RS19200 at 671.404 kb on - strand, within ABZR87_RS19200 at 671.589 kb on + strand at 671.589 kb on + strand at 671.590 kb on - strand at 671.590 kb on - strand at 671.753 kb on + strand, within ABZR87_RS19205 at 671.754 kb on - strand, within ABZR87_RS19205 at 671.754 kb on - strand, within ABZR87_RS19205 at 671.804 kb on + strand, within ABZR87_RS19205 at 671.805 kb on - strand, within ABZR87_RS19205 at 672.625 kb on + strand at 672.625 kb on + strand at 672.626 kb on - strand at 672.649 kb on + strand at 672.649 kb on + strand at 672.649 kb on + strand at 672.657 kb on + strand at 672.658 kb on - strand at 672.658 kb on - strand at 672.658 kb on - strand at 672.670 kb on + strand at 672.670 kb on + strand at 672.670 kb on + strand at 672.671 kb on - strand at 672.671 kb on - strand at 672.671 kb on - strand at 672.671 kb on - strand at 672.671 kb on - strand at 672.671 kb on - strand at 672.671 kb on - strand at 672.826 kb on + strand at 672.827 kb on - strand at 672.867 kb on + strand at 672.868 kb on - strand at 672.874 kb on + strand at 672.874 kb on + strand at 672.874 kb on + strand at 672.874 kb on + strand at 672.875 kb on - strand at 672.875 kb on - strand at 672.897 kb on + strand at 673.015 kb on + strand at 673.015 kb on + strand at 673.016 kb on - strand at 673.044 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 671,040 + ABZR87_RS19200 0.41 -0.2 671,040 + ABZR87_RS19200 0.41 +0.5 671,040 + ABZR87_RS19200 0.41 -0.2 671,040 + ABZR87_RS19200 0.41 -1.3 671,040 + ABZR87_RS19200 0.41 +0.5 671,041 - ABZR87_RS19200 0.41 +1.9 671,041 - ABZR87_RS19200 0.41 -0.2 671,149 + ABZR87_RS19200 0.53 -0.3 671,236 - ABZR87_RS19200 0.63 +1.1 671,236 - ABZR87_RS19200 0.63 +4.2 671,236 - ABZR87_RS19200 0.63 +0.3 671,236 - ABZR87_RS19200 0.63 +0.3 671,333 + ABZR87_RS19200 0.73 -1.1 671,333 + ABZR87_RS19200 0.73 -0.7 671,333 + ABZR87_RS19200 0.73 +0.1 671,334 - ABZR87_RS19200 0.73 -0.3 671,334 - ABZR87_RS19200 0.73 -1.2 671,355 + ABZR87_RS19200 0.76 +0.2 671,371 - ABZR87_RS19200 0.77 +0.5 671,371 - ABZR87_RS19200 0.77 -0.4 671,404 - ABZR87_RS19200 0.81 +0.6 671,404 - ABZR87_RS19200 0.81 -2.4 671,404 - ABZR87_RS19200 0.81 -0.4 671,404 - ABZR87_RS19200 0.81 -1.0 671,589 + +1.5 671,589 + -1.3 671,590 - -0.3 671,590 - +1.1 671,753 + ABZR87_RS19205 0.26 -2.4 671,754 - ABZR87_RS19205 0.26 -1.1 671,754 - ABZR87_RS19205 0.26 +0.5 671,804 + ABZR87_RS19205 0.38 -1.0 671,805 - ABZR87_RS19205 0.38 -0.6 672,625 + -1.0 672,625 + -0.1 672,626 - -1.8 672,649 + -0.6 672,649 + -0.4 672,649 + +0.8 672,657 + +0.3 672,658 - +0.9 672,658 - +0.8 672,658 - -0.0 672,670 + +0.1 672,670 + +0.6 672,670 + -1.5 672,671 - -2.0 672,671 - -1.7 672,671 - +0.0 672,671 - +1.3 672,671 - +1.2 672,671 - -0.4 672,671 - +1.3 672,826 + +0.7 672,827 - +0.2 672,867 + -0.2 672,868 - -0.4 672,874 + +0.5 672,874 + -3.5 672,874 + +1.1 672,874 + +0.6 672,875 - -2.0 672,875 - +1.0 672,897 + -0.3 673,015 + -1.2 673,015 + +2.4 673,016 - +2.5 673,044 + +2.0
Or see this region's nucleotide sequence