Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19120

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS19115 and ABZR87_RS19120 are separated by 11 nucleotidesABZR87_RS19120 and ABZR87_RS19125 are separated by 328 nucleotides ABZR87_RS19115: ABZR87_RS19115 - amino acid deaminase, at 649,299 to 650,576 _RS19115 ABZR87_RS19120: ABZR87_RS19120 - sugar kinase, at 650,588 to 651,514 _RS19120 ABZR87_RS19125: ABZR87_RS19125 - penicillin acylase family protein, at 651,843 to 654,272 _RS19125 Position (kb) 650 651 652Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 649.629 kb on + strand, within ABZR87_RS19115at 649.629 kb on + strand, within ABZR87_RS19115at 649.629 kb on + strand, within ABZR87_RS19115at 649.629 kb on + strand, within ABZR87_RS19115at 649.629 kb on + strand, within ABZR87_RS19115at 649.629 kb on + strand, within ABZR87_RS19115at 649.630 kb on - strand, within ABZR87_RS19115at 649.630 kb on - strand, within ABZR87_RS19115at 649.630 kb on - strand, within ABZR87_RS19115at 649.630 kb on - strand, within ABZR87_RS19115at 649.929 kb on + strand, within ABZR87_RS19115at 649.929 kb on + strand, within ABZR87_RS19115at 649.930 kb on - strand, within ABZR87_RS19115at 649.930 kb on - strand, within ABZR87_RS19115at 649.930 kb on - strand, within ABZR87_RS19115at 649.984 kb on + strand, within ABZR87_RS19115at 649.985 kb on - strand, within ABZR87_RS19115at 649.985 kb on - strand, within ABZR87_RS19115at 650.099 kb on + strand, within ABZR87_RS19115at 650.139 kb on + strand, within ABZR87_RS19115at 650.139 kb on + strand, within ABZR87_RS19115at 650.140 kb on - strand, within ABZR87_RS19115at 650.163 kb on + strand, within ABZR87_RS19115at 650.163 kb on + strand, within ABZR87_RS19115at 650.163 kb on + strand, within ABZR87_RS19115at 650.163 kb on + strand, within ABZR87_RS19115at 650.253 kb on + strand, within ABZR87_RS19115at 650.253 kb on + strand, within ABZR87_RS19115at 650.253 kb on + strand, within ABZR87_RS19115at 650.254 kb on - strand, within ABZR87_RS19115at 650.424 kb on + strand, within ABZR87_RS19115at 650.424 kb on + strand, within ABZR87_RS19115at 650.424 kb on + strand, within ABZR87_RS19115at 650.425 kb on - strand, within ABZR87_RS19115at 650.425 kb on - strand, within ABZR87_RS19115at 650.541 kb on + strandat 650.541 kb on + strandat 650.541 kb on + strandat 650.542 kb on - strandat 650.542 kb on - strandat 650.568 kb on + strandat 650.568 kb on + strandat 650.568 kb on + strandat 650.569 kb on - strandat 650.569 kb on - strandat 650.569 kb on - strandat 650.606 kb on + strandat 650.680 kb on + strandat 650.729 kb on + strand, within ABZR87_RS19120at 650.730 kb on - strand, within ABZR87_RS19120at 650.731 kb on + strand, within ABZR87_RS19120at 650.731 kb on + strand, within ABZR87_RS19120at 650.731 kb on + strand, within ABZR87_RS19120at 650.731 kb on + strand, within ABZR87_RS19120at 650.732 kb on - strand, within ABZR87_RS19120at 650.732 kb on - strand, within ABZR87_RS19120at 650.807 kb on + strand, within ABZR87_RS19120at 650.807 kb on + strand, within ABZR87_RS19120at 650.808 kb on - strand, within ABZR87_RS19120at 650.808 kb on - strand, within ABZR87_RS19120at 650.808 kb on - strand, within ABZR87_RS19120at 650.808 kb on - strand, within ABZR87_RS19120at 650.808 kb on - strand, within ABZR87_RS19120at 650.808 kb on - strand, within ABZR87_RS19120at 650.808 kb on - strand, within ABZR87_RS19120at 650.843 kb on + strand, within ABZR87_RS19120at 650.843 kb on + strand, within ABZR87_RS19120at 650.883 kb on - strand, within ABZR87_RS19120at 650.883 kb on - strand, within ABZR87_RS19120at 651.165 kb on + strand, within ABZR87_RS19120at 651.165 kb on + strand, within ABZR87_RS19120at 651.165 kb on + strand, within ABZR87_RS19120at 651.165 kb on + strand, within ABZR87_RS19120at 651.165 kb on + strand, within ABZR87_RS19120at 651.166 kb on - strand, within ABZR87_RS19120at 651.166 kb on - strand, within ABZR87_RS19120at 651.208 kb on + strand, within ABZR87_RS19120at 651.266 kb on + strand, within ABZR87_RS19120at 651.267 kb on - strand, within ABZR87_RS19120at 651.267 kb on - strand, within ABZR87_RS19120at 651.307 kb on + strand, within ABZR87_RS19120at 651.308 kb on - strand, within ABZR87_RS19120at 651.308 kb on - strand, within ABZR87_RS19120at 651.408 kb on - strand, within ABZR87_RS19120at 651.433 kb on + strandat 651.443 kb on + strandat 651.446 kb on - strandat 651.446 kb on - strandat 651.446 kb on - strandat 651.446 kb on - strandat 651.727 kb on + strandat 651.844 kb on + strandat 651.845 kb on - strandat 651.845 kb on - strandat 651.905 kb on - strandat 651.905 kb on - strandat 651.919 kb on + strandat 651.920 kb on - strandat 651.920 kb on - strandat 651.920 kb on - strandat 651.920 kb on - strandat 651.955 kb on + strandat 652.081 kb on + strandat 652.103 kb on - strand, within ABZR87_RS19125at 652.103 kb on - strand, within ABZR87_RS19125at 652.251 kb on - strand, within ABZR87_RS19125at 652.331 kb on + strand, within ABZR87_RS19125at 652.331 kb on + strand, within ABZR87_RS19125at 652.332 kb on - strand, within ABZR87_RS19125at 652.335 kb on + strand, within ABZR87_RS19125at 652.361 kb on + strand, within ABZR87_RS19125at 652.362 kb on - strand, within ABZR87_RS19125at 652.362 kb on - strand, within ABZR87_RS19125at 652.420 kb on - strand, within ABZR87_RS19125

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
remove
649,629 + ABZR87_RS19115 0.26 +0.1
649,629 + ABZR87_RS19115 0.26 -1.3
649,629 + ABZR87_RS19115 0.26 +0.8
649,629 + ABZR87_RS19115 0.26 -1.2
649,629 + ABZR87_RS19115 0.26 +1.7
649,629 + ABZR87_RS19115 0.26 +0.3
649,630 - ABZR87_RS19115 0.26 +1.0
649,630 - ABZR87_RS19115 0.26 +1.2
649,630 - ABZR87_RS19115 0.26 -1.1
649,630 - ABZR87_RS19115 0.26 -0.6
649,929 + ABZR87_RS19115 0.49 -1.6
649,929 + ABZR87_RS19115 0.49 -0.2
649,930 - ABZR87_RS19115 0.49 -0.3
649,930 - ABZR87_RS19115 0.49 +0.7
649,930 - ABZR87_RS19115 0.49 +0.2
649,984 + ABZR87_RS19115 0.54 +1.9
649,985 - ABZR87_RS19115 0.54 -0.3
649,985 - ABZR87_RS19115 0.54 -0.6
650,099 + ABZR87_RS19115 0.63 -0.1
650,139 + ABZR87_RS19115 0.66 +0.3
650,139 + ABZR87_RS19115 0.66 +0.1
650,140 - ABZR87_RS19115 0.66 -0.9
650,163 + ABZR87_RS19115 0.68 +0.5
650,163 + ABZR87_RS19115 0.68 -0.6
650,163 + ABZR87_RS19115 0.68 -0.2
650,163 + ABZR87_RS19115 0.68 +1.2
650,253 + ABZR87_RS19115 0.75 +0.5
650,253 + ABZR87_RS19115 0.75 -0.5
650,253 + ABZR87_RS19115 0.75 -0.9
650,254 - ABZR87_RS19115 0.75 -1.6
650,424 + ABZR87_RS19115 0.88 -1.1
650,424 + ABZR87_RS19115 0.88 -0.7
650,424 + ABZR87_RS19115 0.88 +0.8
650,425 - ABZR87_RS19115 0.88 -0.6
650,425 - ABZR87_RS19115 0.88 -0.2
650,541 + +1.9
650,541 + +0.7
650,541 + -1.1
650,542 - +0.4
650,542 - -1.8
650,568 + -3.0
650,568 + +2.2
650,568 + +1.2
650,569 - +1.9
650,569 - -1.8
650,569 - +1.2
650,606 + -1.0
650,680 + -0.1
650,729 + ABZR87_RS19120 0.15 +0.4
650,730 - ABZR87_RS19120 0.15 +0.1
650,731 + ABZR87_RS19120 0.15 +1.4
650,731 + ABZR87_RS19120 0.15 +0.8
650,731 + ABZR87_RS19120 0.15 -0.6
650,731 + ABZR87_RS19120 0.15 +0.1
650,732 - ABZR87_RS19120 0.16 +0.2
650,732 - ABZR87_RS19120 0.16 +0.2
650,807 + ABZR87_RS19120 0.24 -0.9
650,807 + ABZR87_RS19120 0.24 +0.2
650,808 - ABZR87_RS19120 0.24 +2.0
650,808 - ABZR87_RS19120 0.24 +0.8
650,808 - ABZR87_RS19120 0.24 +0.7
650,808 - ABZR87_RS19120 0.24 +1.2
650,808 - ABZR87_RS19120 0.24 -1.7
650,808 - ABZR87_RS19120 0.24 +0.2
650,808 - ABZR87_RS19120 0.24 -0.0
650,843 + ABZR87_RS19120 0.28 -2.0
650,843 + ABZR87_RS19120 0.28 +0.8
650,883 - ABZR87_RS19120 0.32 +1.4
650,883 - ABZR87_RS19120 0.32 -0.1
651,165 + ABZR87_RS19120 0.62 +0.7
651,165 + ABZR87_RS19120 0.62 -1.6
651,165 + ABZR87_RS19120 0.62 +1.0
651,165 + ABZR87_RS19120 0.62 -1.3
651,165 + ABZR87_RS19120 0.62 +0.0
651,166 - ABZR87_RS19120 0.62 -0.5
651,166 - ABZR87_RS19120 0.62 -2.6
651,208 + ABZR87_RS19120 0.67 -0.9
651,266 + ABZR87_RS19120 0.73 +1.2
651,267 - ABZR87_RS19120 0.73 +0.9
651,267 - ABZR87_RS19120 0.73 -1.2
651,307 + ABZR87_RS19120 0.78 +0.3
651,308 - ABZR87_RS19120 0.78 +0.5
651,308 - ABZR87_RS19120 0.78 +0.6
651,408 - ABZR87_RS19120 0.88 -1.0
651,433 + -2.6
651,443 + +0.1
651,446 - +0.9
651,446 - +1.1
651,446 - -2.2
651,446 - -0.1
651,727 + -0.9
651,844 + -1.1
651,845 - -1.6
651,845 - -0.7
651,905 - +0.3
651,905 - -0.6
651,919 + +0.7
651,920 - +0.1
651,920 - +1.0
651,920 - -0.7
651,920 - +1.3
651,955 + -2.7
652,081 + -1.5
652,103 - ABZR87_RS19125 0.11 -1.5
652,103 - ABZR87_RS19125 0.11 -0.6
652,251 - ABZR87_RS19125 0.17 +0.8
652,331 + ABZR87_RS19125 0.20 -1.2
652,331 + ABZR87_RS19125 0.20 +0.5
652,332 - ABZR87_RS19125 0.20 +1.5
652,335 + ABZR87_RS19125 0.20 +2.1
652,361 + ABZR87_RS19125 0.21 -1.3
652,362 - ABZR87_RS19125 0.21 +0.6
652,362 - ABZR87_RS19125 0.21 +0.5
652,420 - ABZR87_RS19125 0.24 -0.0

Or see this region's nucleotide sequence