Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18120

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18115 and ABZR87_RS18120 overlap by 26 nucleotidesABZR87_RS18120 and ABZR87_RS18125 are separated by 38 nucleotidesABZR87_RS18125 and ABZR87_RS18130 overlap by 1 nucleotides ABZR87_RS18115: ABZR87_RS18115 - FHA domain-containing protein, at 426,585 to 427,856 _RS18115 ABZR87_RS18120: ABZR87_RS18120 - type III secretion system outer membrane ring subunit SctC, at 427,831 to 429,708 _RS18120 ABZR87_RS18125: ABZR87_RS18125 - flagellar biosynthetic protein FliQ, at 429,747 to 430,025 _RS18125 ABZR87_RS18130: ABZR87_RS18130 - type III secretion system export apparatus subunit SctV, at 430,025 to 432,220 _RS18130 Position (kb) 427 428 429 430Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 426.868 kb on + strand, within ABZR87_RS18115at 426.869 kb on - strand, within ABZR87_RS18115at 426.938 kb on - strand, within ABZR87_RS18115at 426.938 kb on - strand, within ABZR87_RS18115at 427.123 kb on + strand, within ABZR87_RS18115at 427.123 kb on + strand, within ABZR87_RS18115at 427.123 kb on + strand, within ABZR87_RS18115at 427.123 kb on + strand, within ABZR87_RS18115at 427.123 kb on + strand, within ABZR87_RS18115at 427.123 kb on + strand, within ABZR87_RS18115at 427.123 kb on + strand, within ABZR87_RS18115at 427.124 kb on - strand, within ABZR87_RS18115at 427.124 kb on - strand, within ABZR87_RS18115at 427.201 kb on + strand, within ABZR87_RS18115at 427.202 kb on - strand, within ABZR87_RS18115at 427.216 kb on + strand, within ABZR87_RS18115at 427.217 kb on - strand, within ABZR87_RS18115at 427.680 kb on + strand, within ABZR87_RS18115at 427.680 kb on + strand, within ABZR87_RS18115at 427.680 kb on + strand, within ABZR87_RS18115at 427.681 kb on - strand, within ABZR87_RS18115at 427.681 kb on - strand, within ABZR87_RS18115at 427.681 kb on - strand, within ABZR87_RS18115at 427.792 kb on + strandat 427.792 kb on + strandat 427.792 kb on + strandat 427.793 kb on - strandat 428.081 kb on + strand, within ABZR87_RS18120at 428.117 kb on + strand, within ABZR87_RS18120at 428.118 kb on - strand, within ABZR87_RS18120at 428.399 kb on + strand, within ABZR87_RS18120at 428.399 kb on + strand, within ABZR87_RS18120at 428.435 kb on + strand, within ABZR87_RS18120at 428.435 kb on + strand, within ABZR87_RS18120at 428.435 kb on + strand, within ABZR87_RS18120at 428.436 kb on - strand, within ABZR87_RS18120at 428.552 kb on + strand, within ABZR87_RS18120at 428.552 kb on + strand, within ABZR87_RS18120at 428.553 kb on - strand, within ABZR87_RS18120at 428.553 kb on - strand, within ABZR87_RS18120at 428.553 kb on - strand, within ABZR87_RS18120at 428.553 kb on - strand, within ABZR87_RS18120at 428.553 kb on - strand, within ABZR87_RS18120at 428.553 kb on - strand, within ABZR87_RS18120at 428.553 kb on - strand, within ABZR87_RS18120at 428.813 kb on + strand, within ABZR87_RS18120at 428.948 kb on + strand, within ABZR87_RS18120at 429.068 kb on + strand, within ABZR87_RS18120at 429.152 kb on + strand, within ABZR87_RS18120at 429.152 kb on + strand, within ABZR87_RS18120at 429.152 kb on + strand, within ABZR87_RS18120at 429.153 kb on - strand, within ABZR87_RS18120at 429.153 kb on - strand, within ABZR87_RS18120at 429.263 kb on + strand, within ABZR87_RS18120at 429.263 kb on + strand, within ABZR87_RS18120at 429.264 kb on - strand, within ABZR87_RS18120at 429.264 kb on - strand, within ABZR87_RS18120at 429.264 kb on - strand, within ABZR87_RS18120at 429.408 kb on - strand, within ABZR87_RS18120at 429.408 kb on - strand, within ABZR87_RS18120at 429.425 kb on + strand, within ABZR87_RS18120at 429.425 kb on + strand, within ABZR87_RS18120at 429.425 kb on + strand, within ABZR87_RS18120at 429.426 kb on - strand, within ABZR87_RS18120at 429.428 kb on + strand, within ABZR87_RS18120at 429.443 kb on + strand, within ABZR87_RS18120at 429.661 kb on - strandat 430.185 kb on + strandat 430.185 kb on + strandat 430.185 kb on + strandat 430.186 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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426,868 + ABZR87_RS18115 0.22 -0.7
426,869 - ABZR87_RS18115 0.22 -0.2
426,938 - ABZR87_RS18115 0.28 +0.1
426,938 - ABZR87_RS18115 0.28 +1.3
427,123 + ABZR87_RS18115 0.42 -1.2
427,123 + ABZR87_RS18115 0.42 -2.2
427,123 + ABZR87_RS18115 0.42 +1.2
427,123 + ABZR87_RS18115 0.42 -0.4
427,123 + ABZR87_RS18115 0.42 -0.2
427,123 + ABZR87_RS18115 0.42 +1.3
427,123 + ABZR87_RS18115 0.42 -0.2
427,124 - ABZR87_RS18115 0.42 +0.7
427,124 - ABZR87_RS18115 0.42 -0.2
427,201 + ABZR87_RS18115 0.48 -0.7
427,202 - ABZR87_RS18115 0.49 +1.4
427,216 + ABZR87_RS18115 0.50 -0.4
427,217 - ABZR87_RS18115 0.50 -0.3
427,680 + ABZR87_RS18115 0.86 -0.6
427,680 + ABZR87_RS18115 0.86 -2.0
427,680 + ABZR87_RS18115 0.86 -3.3
427,681 - ABZR87_RS18115 0.86 -1.7
427,681 - ABZR87_RS18115 0.86 -2.8
427,681 - ABZR87_RS18115 0.86 -0.0
427,792 + -2.8
427,792 + +0.8
427,792 + -0.9
427,793 - +0.4
428,081 + ABZR87_RS18120 0.13 +1.1
428,117 + ABZR87_RS18120 0.15 -0.2
428,118 - ABZR87_RS18120 0.15 +0.5
428,399 + ABZR87_RS18120 0.30 +0.0
428,399 + ABZR87_RS18120 0.30 -1.5
428,435 + ABZR87_RS18120 0.32 +0.2
428,435 + ABZR87_RS18120 0.32 +0.1
428,435 + ABZR87_RS18120 0.32 +0.1
428,436 - ABZR87_RS18120 0.32 -1.3
428,552 + ABZR87_RS18120 0.38 -0.3
428,552 + ABZR87_RS18120 0.38 +1.0
428,553 - ABZR87_RS18120 0.38 -0.0
428,553 - ABZR87_RS18120 0.38 +0.6
428,553 - ABZR87_RS18120 0.38 -1.0
428,553 - ABZR87_RS18120 0.38 -2.2
428,553 - ABZR87_RS18120 0.38 +0.2
428,553 - ABZR87_RS18120 0.38 -0.4
428,553 - ABZR87_RS18120 0.38 -0.4
428,813 + ABZR87_RS18120 0.52 +1.4
428,948 + ABZR87_RS18120 0.59 -0.2
429,068 + ABZR87_RS18120 0.66 -1.8
429,152 + ABZR87_RS18120 0.70 -0.1
429,152 + ABZR87_RS18120 0.70 -1.2
429,152 + ABZR87_RS18120 0.70 +4.9
429,153 - ABZR87_RS18120 0.70 +0.1
429,153 - ABZR87_RS18120 0.70 -0.6
429,263 + ABZR87_RS18120 0.76 +0.9
429,263 + ABZR87_RS18120 0.76 -0.3
429,264 - ABZR87_RS18120 0.76 -1.5
429,264 - ABZR87_RS18120 0.76 -1.3
429,264 - ABZR87_RS18120 0.76 +0.8
429,408 - ABZR87_RS18120 0.84 -2.1
429,408 - ABZR87_RS18120 0.84 -1.4
429,425 + ABZR87_RS18120 0.85 +0.8
429,425 + ABZR87_RS18120 0.85 +1.6
429,425 + ABZR87_RS18120 0.85 -0.4
429,426 - ABZR87_RS18120 0.85 +0.2
429,428 + ABZR87_RS18120 0.85 +1.2
429,443 + ABZR87_RS18120 0.86 +0.1
429,661 - +0.5
430,185 + +0.7
430,185 + -1.1
430,185 + -3.0
430,186 - -1.1

Or see this region's nucleotide sequence