Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17650

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17645 and ABZR87_RS17650 are separated by 87 nucleotidesABZR87_RS17650 and ABZR87_RS17655 are separated by 87 nucleotides ABZR87_RS17645: ABZR87_RS17645 - TolC family protein, at 323,766 to 325,226 _RS17645 ABZR87_RS17650: ABZR87_RS17650 - TetR/AcrR family transcriptional regulator, at 325,314 to 325,928 _RS17650 ABZR87_RS17655: ABZR87_RS17655 - efflux RND transporter periplasmic adaptor subunit, at 326,016 to 327,131 _RS17655 Position (kb) 325 326Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 324.616 kb on - strand, within ABZR87_RS17645at 324.616 kb on - strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.668 kb on - strand, within ABZR87_RS17645at 324.668 kb on - strand, within ABZR87_RS17645at 324.668 kb on - strand, within ABZR87_RS17645at 324.668 kb on - strand, within ABZR87_RS17645at 324.668 kb on - strand, within ABZR87_RS17645at 324.668 kb on - strand, within ABZR87_RS17645at 324.669 kb on + strand, within ABZR87_RS17645at 324.733 kb on + strand, within ABZR87_RS17645at 324.733 kb on + strand, within ABZR87_RS17645at 324.826 kb on + strand, within ABZR87_RS17645at 324.886 kb on + strand, within ABZR87_RS17645at 324.887 kb on - strand, within ABZR87_RS17645at 324.887 kb on - strand, within ABZR87_RS17645at 325.153 kb on + strandat 325.153 kb on + strandat 325.153 kb on + strandat 325.153 kb on + strandat 325.153 kb on + strandat 325.153 kb on + strandat 325.153 kb on + strandat 325.154 kb on - strandat 325.154 kb on - strandat 325.154 kb on - strandat 325.206 kb on - strandat 325.206 kb on - strandat 325.301 kb on + strandat 325.410 kb on + strand, within ABZR87_RS17650at 325.470 kb on + strand, within ABZR87_RS17650at 325.470 kb on + strand, within ABZR87_RS17650at 325.471 kb on - strand, within ABZR87_RS17650at 325.471 kb on - strand, within ABZR87_RS17650at 325.471 kb on - strand, within ABZR87_RS17650at 325.471 kb on - strand, within ABZR87_RS17650at 325.471 kb on - strand, within ABZR87_RS17650at 325.471 kb on - strand, within ABZR87_RS17650at 325.476 kb on + strand, within ABZR87_RS17650at 325.476 kb on + strand, within ABZR87_RS17650at 325.710 kb on + strand, within ABZR87_RS17650at 325.815 kb on + strand, within ABZR87_RS17650at 325.815 kb on + strand, within ABZR87_RS17650at 325.833 kb on + strand, within ABZR87_RS17650at 325.833 kb on + strand, within ABZR87_RS17650at 325.834 kb on - strand, within ABZR87_RS17650at 325.869 kb on + strandat 325.869 kb on + strandat 325.870 kb on - strandat 325.870 kb on - strandat 326.036 kb on + strandat 326.037 kb on - strandat 326.042 kb on + strandat 326.042 kb on + strandat 326.043 kb on - strandat 326.043 kb on - strandat 326.043 kb on - strandat 326.430 kb on + strand, within ABZR87_RS17655at 326.431 kb on - strand, within ABZR87_RS17655at 326.431 kb on - strand, within ABZR87_RS17655at 326.641 kb on + strand, within ABZR87_RS17655at 326.641 kb on + strand, within ABZR87_RS17655at 326.709 kb on + strand, within ABZR87_RS17655at 326.723 kb on - strand, within ABZR87_RS17655at 326.787 kb on + strand, within ABZR87_RS17655at 326.788 kb on - strand, within ABZR87_RS17655at 326.788 kb on - strand, within ABZR87_RS17655at 326.788 kb on - strand, within ABZR87_RS17655at 326.788 kb on - strand, within ABZR87_RS17655at 326.833 kb on + strand, within ABZR87_RS17655at 326.927 kb on - strand, within ABZR87_RS17655

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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324,616 - ABZR87_RS17645 0.58 -1.4
324,616 - ABZR87_RS17645 0.58 -1.0
324,667 + ABZR87_RS17645 0.62 +0.5
324,667 + ABZR87_RS17645 0.62 -0.0
324,667 + ABZR87_RS17645 0.62 +0.5
324,667 + ABZR87_RS17645 0.62 -2.7
324,667 + ABZR87_RS17645 0.62 +0.5
324,667 + ABZR87_RS17645 0.62 -0.3
324,667 + ABZR87_RS17645 0.62 -1.2
324,667 + ABZR87_RS17645 0.62 -0.3
324,667 + ABZR87_RS17645 0.62 -0.7
324,668 - ABZR87_RS17645 0.62 -0.1
324,668 - ABZR87_RS17645 0.62 -1.0
324,668 - ABZR87_RS17645 0.62 -2.8
324,668 - ABZR87_RS17645 0.62 -0.5
324,668 - ABZR87_RS17645 0.62 -2.1
324,668 - ABZR87_RS17645 0.62 +1.3
324,669 + ABZR87_RS17645 0.62 -0.0
324,733 + ABZR87_RS17645 0.66 -2.5
324,733 + ABZR87_RS17645 0.66 -0.7
324,826 + ABZR87_RS17645 0.73 -0.4
324,886 + ABZR87_RS17645 0.77 +0.4
324,887 - ABZR87_RS17645 0.77 +1.3
324,887 - ABZR87_RS17645 0.77 +0.2
325,153 + +1.3
325,153 + +1.6
325,153 + +2.2
325,153 + +0.4
325,153 + -1.4
325,153 + -1.4
325,153 + -0.4
325,154 - +0.9
325,154 - +1.2
325,154 - -0.8
325,206 - -1.3
325,206 - -2.9
325,301 + -0.3
325,410 + ABZR87_RS17650 0.16 +0.5
325,470 + ABZR87_RS17650 0.25 -3.0
325,470 + ABZR87_RS17650 0.25 -1.9
325,471 - ABZR87_RS17650 0.26 -1.6
325,471 - ABZR87_RS17650 0.26 -2.7
325,471 - ABZR87_RS17650 0.26 -2.8
325,471 - ABZR87_RS17650 0.26 -2.6
325,471 - ABZR87_RS17650 0.26 -0.3
325,471 - ABZR87_RS17650 0.26 -1.1
325,476 + ABZR87_RS17650 0.26 -2.8
325,476 + ABZR87_RS17650 0.26 +0.9
325,710 + ABZR87_RS17650 0.64 -2.8
325,815 + ABZR87_RS17650 0.81 -1.0
325,815 + ABZR87_RS17650 0.81 -0.1
325,833 + ABZR87_RS17650 0.84 -3.0
325,833 + ABZR87_RS17650 0.84 -2.2
325,834 - ABZR87_RS17650 0.85 -1.5
325,869 + -3.7
325,869 + -1.2
325,870 - -0.6
325,870 - -1.0
326,036 + -0.9
326,037 - -0.7
326,042 + +0.7
326,042 + -0.3
326,043 - -0.5
326,043 - +1.1
326,043 - +2.9
326,430 + ABZR87_RS17655 0.37 +0.1
326,431 - ABZR87_RS17655 0.37 -1.1
326,431 - ABZR87_RS17655 0.37 +0.7
326,641 + ABZR87_RS17655 0.56 -0.6
326,641 + ABZR87_RS17655 0.56 +1.4
326,709 + ABZR87_RS17655 0.62 +1.0
326,723 - ABZR87_RS17655 0.63 +1.8
326,787 + ABZR87_RS17655 0.69 -0.0
326,788 - ABZR87_RS17655 0.69 +3.0
326,788 - ABZR87_RS17655 0.69 +2.3
326,788 - ABZR87_RS17655 0.69 +0.3
326,788 - ABZR87_RS17655 0.69 -1.4
326,833 + ABZR87_RS17655 0.73 -0.6
326,927 - ABZR87_RS17655 0.82 -1.3

Or see this region's nucleotide sequence