Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17525

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17515 and ABZR87_RS17520 overlap by 4 nucleotidesABZR87_RS17520 and ABZR87_RS17525 are separated by 8 nucleotidesABZR87_RS17525 and ABZR87_RS17530 are separated by 170 nucleotidesABZR87_RS17530 and ABZR87_RS17535 overlap by 1 nucleotides ABZR87_RS17515: ABZR87_RS17515 - voltage-gated chloride channel family protein, at 292,360 to 293,640 _RS17515 ABZR87_RS17520: ABZR87_RS17520 - GNAT family protein, at 293,637 to 294,242 _RS17520 ABZR87_RS17525: ABZR87_RS17525 - helix-turn-helix domain-containing protein, at 294,251 to 294,961 _RS17525 ABZR87_RS17530: ABZR87_RS17530 - diguanylate cyclase, at 295,132 to 295,830 _RS17530 ABZR87_RS17535: ABZR87_RS17535 - NAD(P)-dependent oxidoreductase, at 295,830 to 296,780 _RS17535 Position (kb) 294 295Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 293.335 kb on + strand, within ABZR87_RS17515at 293.335 kb on + strand, within ABZR87_RS17515at 293.336 kb on - strand, within ABZR87_RS17515at 293.336 kb on - strand, within ABZR87_RS17515at 293.336 kb on - strand, within ABZR87_RS17515at 293.368 kb on + strand, within ABZR87_RS17515at 293.368 kb on + strand, within ABZR87_RS17515at 293.369 kb on - strand, within ABZR87_RS17515at 293.440 kb on - strand, within ABZR87_RS17515at 293.525 kb on - strandat 293.525 kb on - strandat 293.525 kb on - strandat 293.525 kb on - strandat 293.525 kb on - strandat 293.525 kb on - strandat 293.551 kb on + strandat 293.552 kb on - strandat 293.783 kb on + strand, within ABZR87_RS17520at 293.784 kb on - strand, within ABZR87_RS17520at 294.073 kb on + strand, within ABZR87_RS17520at 294.073 kb on + strand, within ABZR87_RS17520at 294.073 kb on + strand, within ABZR87_RS17520at 294.073 kb on + strand, within ABZR87_RS17520at 294.074 kb on - strand, within ABZR87_RS17520at 294.074 kb on - strand, within ABZR87_RS17520at 294.074 kb on - strand, within ABZR87_RS17520at 294.074 kb on - strand, within ABZR87_RS17520at 294.074 kb on - strand, within ABZR87_RS17520at 294.074 kb on - strand, within ABZR87_RS17520at 294.261 kb on + strandat 294.261 kb on + strandat 294.262 kb on - strandat 294.262 kb on - strandat 294.262 kb on - strandat 294.283 kb on + strandat 294.283 kb on + strandat 294.283 kb on + strandat 294.283 kb on + strandat 294.284 kb on - strandat 294.483 kb on - strand, within ABZR87_RS17525at 294.501 kb on + strand, within ABZR87_RS17525at 294.501 kb on + strand, within ABZR87_RS17525at 294.501 kb on + strand, within ABZR87_RS17525at 294.502 kb on - strand, within ABZR87_RS17525at 294.502 kb on - strand, within ABZR87_RS17525at 294.651 kb on + strand, within ABZR87_RS17525at 294.651 kb on + strand, within ABZR87_RS17525at 294.651 kb on + strand, within ABZR87_RS17525at 294.651 kb on + strand, within ABZR87_RS17525at 294.652 kb on - strand, within ABZR87_RS17525at 294.652 kb on - strand, within ABZR87_RS17525at 294.652 kb on - strand, within ABZR87_RS17525at 294.652 kb on - strand, within ABZR87_RS17525at 294.655 kb on - strand, within ABZR87_RS17525at 294.655 kb on - strand, within ABZR87_RS17525at 294.655 kb on - strand, within ABZR87_RS17525at 294.655 kb on - strand, within ABZR87_RS17525at 294.655 kb on - strand, within ABZR87_RS17525at 294.655 kb on - strand, within ABZR87_RS17525at 294.735 kb on + strand, within ABZR87_RS17525at 294.735 kb on + strand, within ABZR87_RS17525at 294.735 kb on + strand, within ABZR87_RS17525at 294.736 kb on - strand, within ABZR87_RS17525at 294.736 kb on - strand, within ABZR87_RS17525at 294.750 kb on + strand, within ABZR87_RS17525at 294.801 kb on + strand, within ABZR87_RS17525at 294.801 kb on + strand, within ABZR87_RS17525at 294.801 kb on + strand, within ABZR87_RS17525at 294.801 kb on + strand, within ABZR87_RS17525at 294.801 kb on + strand, within ABZR87_RS17525at 294.801 kb on + strand, within ABZR87_RS17525at 294.802 kb on - strand, within ABZR87_RS17525at 294.802 kb on - strand, within ABZR87_RS17525at 294.802 kb on - strand, within ABZR87_RS17525at 294.802 kb on - strand, within ABZR87_RS17525at 294.802 kb on - strand, within ABZR87_RS17525at 294.802 kb on - strand, within ABZR87_RS17525at 294.802 kb on - strand, within ABZR87_RS17525at 294.802 kb on - strand, within ABZR87_RS17525at 294.802 kb on - strand, within ABZR87_RS17525at 294.802 kb on - strand, within ABZR87_RS17525at 294.802 kb on - strand, within ABZR87_RS17525at 294.802 kb on - strand, within ABZR87_RS17525at 294.802 kb on - strand, within ABZR87_RS17525at 294.802 kb on - strand, within ABZR87_RS17525at 294.802 kb on - strand, within ABZR87_RS17525at 294.835 kb on - strand, within ABZR87_RS17525at 294.835 kb on - strand, within ABZR87_RS17525at 295.038 kb on + strandat 295.064 kb on + strandat 295.064 kb on + strandat 295.066 kb on + strandat 295.761 kb on + strandat 295.828 kb on + strandat 295.828 kb on + strandat 295.828 kb on + strandat 295.829 kb on - strandat 295.829 kb on - strandat 295.829 kb on - strandat 295.829 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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293,335 + ABZR87_RS17515 0.76 -1.3
293,335 + ABZR87_RS17515 0.76 -2.1
293,336 - ABZR87_RS17515 0.76 -1.2
293,336 - ABZR87_RS17515 0.76 +0.0
293,336 - ABZR87_RS17515 0.76 -0.6
293,368 + ABZR87_RS17515 0.79 +0.1
293,368 + ABZR87_RS17515 0.79 -2.9
293,369 - ABZR87_RS17515 0.79 -1.9
293,440 - ABZR87_RS17515 0.84 -0.1
293,525 - +2.7
293,525 - +0.3
293,525 - -0.0
293,525 - +0.9
293,525 - -1.6
293,525 - +0.4
293,551 + +0.9
293,552 - +0.2
293,783 + ABZR87_RS17520 0.24 -0.4
293,784 - ABZR87_RS17520 0.24 -0.6
294,073 + ABZR87_RS17520 0.72 +1.4
294,073 + ABZR87_RS17520 0.72 -1.1
294,073 + ABZR87_RS17520 0.72 +2.6
294,073 + ABZR87_RS17520 0.72 -0.6
294,074 - ABZR87_RS17520 0.72 -0.7
294,074 - ABZR87_RS17520 0.72 +1.8
294,074 - ABZR87_RS17520 0.72 -0.6
294,074 - ABZR87_RS17520 0.72 +0.7
294,074 - ABZR87_RS17520 0.72 -2.1
294,074 - ABZR87_RS17520 0.72 +0.5
294,261 + -0.3
294,261 + -3.1
294,262 - -0.6
294,262 - -1.4
294,262 - -1.0
294,283 + -0.5
294,283 + -2.2
294,283 + -3.4
294,283 + -0.3
294,284 - -1.9
294,483 - ABZR87_RS17525 0.33 -0.9
294,501 + ABZR87_RS17525 0.35 -1.7
294,501 + ABZR87_RS17525 0.35 -0.1
294,501 + ABZR87_RS17525 0.35 +0.0
294,502 - ABZR87_RS17525 0.35 -0.2
294,502 - ABZR87_RS17525 0.35 -0.4
294,651 + ABZR87_RS17525 0.56 -0.4
294,651 + ABZR87_RS17525 0.56 -1.4
294,651 + ABZR87_RS17525 0.56 -0.7
294,651 + ABZR87_RS17525 0.56 -0.6
294,652 - ABZR87_RS17525 0.56 +0.4
294,652 - ABZR87_RS17525 0.56 -0.8
294,652 - ABZR87_RS17525 0.56 -1.3
294,652 - ABZR87_RS17525 0.56 +2.0
294,655 - ABZR87_RS17525 0.57 -1.2
294,655 - ABZR87_RS17525 0.57 -0.6
294,655 - ABZR87_RS17525 0.57 -2.6
294,655 - ABZR87_RS17525 0.57 -2.3
294,655 - ABZR87_RS17525 0.57 -1.4
294,655 - ABZR87_RS17525 0.57 -1.6
294,735 + ABZR87_RS17525 0.68 -2.4
294,735 + ABZR87_RS17525 0.68 -1.6
294,735 + ABZR87_RS17525 0.68 +0.3
294,736 - ABZR87_RS17525 0.68 +1.3
294,736 - ABZR87_RS17525 0.68 -0.2
294,750 + ABZR87_RS17525 0.70 -2.5
294,801 + ABZR87_RS17525 0.77 -0.6
294,801 + ABZR87_RS17525 0.77 -2.0
294,801 + ABZR87_RS17525 0.77 -0.3
294,801 + ABZR87_RS17525 0.77 -0.6
294,801 + ABZR87_RS17525 0.77 +0.4
294,801 + ABZR87_RS17525 0.77 -1.0
294,802 - ABZR87_RS17525 0.77 -0.1
294,802 - ABZR87_RS17525 0.77 -0.2
294,802 - ABZR87_RS17525 0.77 -1.9
294,802 - ABZR87_RS17525 0.77 -1.5
294,802 - ABZR87_RS17525 0.77 -0.6
294,802 - ABZR87_RS17525 0.77 -0.1
294,802 - ABZR87_RS17525 0.77 -0.5
294,802 - ABZR87_RS17525 0.77 -0.5
294,802 - ABZR87_RS17525 0.77 -1.6
294,802 - ABZR87_RS17525 0.77 -0.3
294,802 - ABZR87_RS17525 0.77 -0.4
294,802 - ABZR87_RS17525 0.77 -2.4
294,802 - ABZR87_RS17525 0.77 +1.9
294,802 - ABZR87_RS17525 0.77 +0.0
294,802 - ABZR87_RS17525 0.77 -1.1
294,835 - ABZR87_RS17525 0.82 +0.1
294,835 - ABZR87_RS17525 0.82 -0.9
295,038 + +0.4
295,064 + +1.5
295,064 + +1.3
295,066 + +1.1
295,761 + +2.0
295,828 + +0.8
295,828 + +0.4
295,828 + +0.1
295,829 - +0.6
295,829 - -0.5
295,829 - -1.1
295,829 - -0.5

Or see this region's nucleotide sequence