Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17250

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17245 and ABZR87_RS17250 are separated by 95 nucleotidesABZR87_RS17250 and ABZR87_RS17255 overlap by 22 nucleotides ABZR87_RS17245: ABZR87_RS17245 - LysR substrate-binding domain-containing protein, at 227,337 to 228,224 _RS17245 ABZR87_RS17250: ABZR87_RS17250 - nucleoside deaminase, at 228,320 to 228,775 _RS17250 ABZR87_RS17255: ABZR87_RS17255 - CynX/NimT family MFS transporter, at 228,754 to 230,007 _RS17255 Position (kb) 228 229Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 227.587 kb on + strand, within ABZR87_RS17245at 227.587 kb on + strand, within ABZR87_RS17245at 227.588 kb on - strand, within ABZR87_RS17245at 227.588 kb on - strand, within ABZR87_RS17245at 227.644 kb on + strand, within ABZR87_RS17245at 227.821 kb on + strand, within ABZR87_RS17245at 227.821 kb on + strand, within ABZR87_RS17245at 228.285 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.336 kb on - strandat 228.336 kb on - strandat 228.336 kb on - strandat 228.336 kb on - strandat 228.336 kb on - strandat 228.517 kb on + strand, within ABZR87_RS17250at 228.545 kb on + strand, within ABZR87_RS17250at 228.545 kb on + strand, within ABZR87_RS17250at 228.545 kb on + strand, within ABZR87_RS17250at 228.545 kb on + strand, within ABZR87_RS17250at 228.545 kb on + strand, within ABZR87_RS17250at 228.546 kb on - strand, within ABZR87_RS17250at 228.546 kb on - strand, within ABZR87_RS17250at 228.546 kb on - strand, within ABZR87_RS17250at 228.546 kb on - strand, within ABZR87_RS17250at 228.611 kb on + strand, within ABZR87_RS17250at 228.611 kb on + strand, within ABZR87_RS17250at 228.611 kb on + strand, within ABZR87_RS17250at 228.612 kb on - strand, within ABZR87_RS17250at 228.620 kb on + strand, within ABZR87_RS17250at 228.623 kb on + strand, within ABZR87_RS17250at 228.668 kb on + strand, within ABZR87_RS17250at 228.668 kb on + strand, within ABZR87_RS17250at 228.668 kb on + strand, within ABZR87_RS17250at 228.668 kb on + strand, within ABZR87_RS17250at 228.669 kb on - strand, within ABZR87_RS17250at 228.746 kb on + strandat 228.747 kb on - strandat 228.747 kb on - strandat 229.240 kb on + strand, within ABZR87_RS17255at 229.240 kb on + strand, within ABZR87_RS17255at 229.240 kb on + strand, within ABZR87_RS17255at 229.240 kb on + strand, within ABZR87_RS17255at 229.240 kb on + strand, within ABZR87_RS17255at 229.240 kb on + strand, within ABZR87_RS17255at 229.241 kb on - strand, within ABZR87_RS17255at 229.241 kb on - strand, within ABZR87_RS17255at 229.241 kb on - strand, within ABZR87_RS17255at 229.241 kb on - strand, within ABZR87_RS17255at 229.241 kb on - strand, within ABZR87_RS17255at 229.241 kb on - strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.297 kb on - strand, within ABZR87_RS17255at 229.297 kb on - strand, within ABZR87_RS17255at 229.297 kb on - strand, within ABZR87_RS17255at 229.297 kb on - strand, within ABZR87_RS17255at 229.297 kb on - strand, within ABZR87_RS17255at 229.297 kb on - strand, within ABZR87_RS17255at 229.462 kb on + strand, within ABZR87_RS17255at 229.462 kb on + strand, within ABZR87_RS17255at 229.463 kb on - strand, within ABZR87_RS17255at 229.463 kb on - strand, within ABZR87_RS17255at 229.463 kb on - strand, within ABZR87_RS17255at 229.486 kb on + strand, within ABZR87_RS17255at 229.486 kb on + strand, within ABZR87_RS17255at 229.487 kb on - strand, within ABZR87_RS17255at 229.519 kb on + strand, within ABZR87_RS17255at 229.519 kb on + strand, within ABZR87_RS17255at 229.520 kb on - strand, within ABZR87_RS17255at 229.520 kb on - strand, within ABZR87_RS17255

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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227,587 + ABZR87_RS17245 0.28 +0.5
227,587 + ABZR87_RS17245 0.28 -0.4
227,588 - ABZR87_RS17245 0.28 -0.8
227,588 - ABZR87_RS17245 0.28 -1.5
227,644 + ABZR87_RS17245 0.35 -0.5
227,821 + ABZR87_RS17245 0.55 +0.1
227,821 + ABZR87_RS17245 0.55 +0.1
228,285 + -1.8
228,335 + +0.0
228,335 + +4.2
228,335 + -0.5
228,335 + +1.9
228,335 + +0.1
228,335 + +0.5
228,335 + -1.3
228,335 + +1.6
228,335 + -0.3
228,335 + -0.2
228,336 - -0.5
228,336 - +0.0
228,336 - +0.3
228,336 - +1.8
228,336 - +0.9
228,517 + ABZR87_RS17250 0.43 +3.0
228,545 + ABZR87_RS17250 0.49 +1.1
228,545 + ABZR87_RS17250 0.49 +0.4
228,545 + ABZR87_RS17250 0.49 -0.6
228,545 + ABZR87_RS17250 0.49 +0.1
228,545 + ABZR87_RS17250 0.49 -0.3
228,546 - ABZR87_RS17250 0.50 -0.3
228,546 - ABZR87_RS17250 0.50 -0.3
228,546 - ABZR87_RS17250 0.50 -0.4
228,546 - ABZR87_RS17250 0.50 +0.9
228,611 + ABZR87_RS17250 0.64 -0.3
228,611 + ABZR87_RS17250 0.64 +1.1
228,611 + ABZR87_RS17250 0.64 -0.6
228,612 - ABZR87_RS17250 0.64 -1.0
228,620 + ABZR87_RS17250 0.66 +0.6
228,623 + ABZR87_RS17250 0.66 -1.7
228,668 + ABZR87_RS17250 0.76 +1.2
228,668 + ABZR87_RS17250 0.76 +0.6
228,668 + ABZR87_RS17250 0.76 -0.3
228,668 + ABZR87_RS17250 0.76 +2.9
228,669 - ABZR87_RS17250 0.77 -0.4
228,746 + -0.2
228,747 - +0.3
228,747 - -0.4
229,240 + ABZR87_RS17255 0.39 -1.8
229,240 + ABZR87_RS17255 0.39 +1.9
229,240 + ABZR87_RS17255 0.39 +1.1
229,240 + ABZR87_RS17255 0.39 +3.6
229,240 + ABZR87_RS17255 0.39 -0.0
229,240 + ABZR87_RS17255 0.39 -0.8
229,241 - ABZR87_RS17255 0.39 +1.9
229,241 - ABZR87_RS17255 0.39 -0.7
229,241 - ABZR87_RS17255 0.39 +1.2
229,241 - ABZR87_RS17255 0.39 +0.0
229,241 - ABZR87_RS17255 0.39 +1.1
229,241 - ABZR87_RS17255 0.39 -0.3
229,296 + ABZR87_RS17255 0.43 +1.6
229,296 + ABZR87_RS17255 0.43 -1.3
229,296 + ABZR87_RS17255 0.43 +1.9
229,296 + ABZR87_RS17255 0.43 -1.1
229,296 + ABZR87_RS17255 0.43 +0.2
229,296 + ABZR87_RS17255 0.43 +0.3
229,296 + ABZR87_RS17255 0.43 -2.3
229,296 + ABZR87_RS17255 0.43 +0.5
229,296 + ABZR87_RS17255 0.43 -2.3
229,297 - ABZR87_RS17255 0.43 -0.6
229,297 - ABZR87_RS17255 0.43 +0.1
229,297 - ABZR87_RS17255 0.43 +0.3
229,297 - ABZR87_RS17255 0.43 +1.8
229,297 - ABZR87_RS17255 0.43 +1.3
229,297 - ABZR87_RS17255 0.43 +1.0
229,462 + ABZR87_RS17255 0.56 +4.3
229,462 + ABZR87_RS17255 0.56 +1.0
229,463 - ABZR87_RS17255 0.57 +0.1
229,463 - ABZR87_RS17255 0.57 -0.7
229,463 - ABZR87_RS17255 0.57 -0.6
229,486 + ABZR87_RS17255 0.58 -0.5
229,486 + ABZR87_RS17255 0.58 +0.3
229,487 - ABZR87_RS17255 0.58 -2.1
229,519 + ABZR87_RS17255 0.61 +0.4
229,519 + ABZR87_RS17255 0.61 -0.2
229,520 - ABZR87_RS17255 0.61 -2.4
229,520 - ABZR87_RS17255 0.61 +1.3

Or see this region's nucleotide sequence