Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17185

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17180 and ABZR87_RS17185 are separated by 118 nucleotidesABZR87_RS17185 and ABZR87_RS17190 are separated by 55 nucleotides ABZR87_RS17180: ABZR87_RS17180 - class I SAM-dependent methyltransferase, at 200,000 to 200,752 _RS17180 ABZR87_RS17185: ABZR87_RS17185 - amidohydrolase, at 200,871 to 201,791 _RS17185 ABZR87_RS17190: ABZR87_RS17190 - MFS transporter, at 201,847 to 203,094 _RS17190 Position (kb) 200 201 202Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 199.926 kb on + strandat 199.927 kb on - strandat 199.927 kb on - strandat 199.968 kb on + strandat 200.061 kb on + strandat 200.061 kb on + strandat 200.062 kb on - strandat 200.238 kb on + strand, within ABZR87_RS17180at 200.246 kb on + strand, within ABZR87_RS17180at 200.246 kb on + strand, within ABZR87_RS17180at 200.246 kb on + strand, within ABZR87_RS17180at 200.247 kb on - strand, within ABZR87_RS17180at 200.303 kb on + strand, within ABZR87_RS17180at 200.303 kb on + strand, within ABZR87_RS17180at 200.304 kb on - strand, within ABZR87_RS17180at 200.391 kb on + strand, within ABZR87_RS17180at 200.547 kb on + strand, within ABZR87_RS17180at 200.548 kb on - strand, within ABZR87_RS17180at 200.701 kb on - strandat 200.764 kb on - strandat 200.764 kb on - strandat 200.793 kb on + strandat 200.793 kb on + strandat 200.793 kb on + strandat 200.794 kb on - strandat 200.794 kb on - strandat 200.794 kb on - strandat 200.861 kb on + strandat 200.861 kb on + strandat 200.861 kb on + strandat 200.861 kb on + strandat 200.861 kb on + strandat 200.861 kb on + strandat 200.862 kb on - strandat 200.862 kb on - strandat 200.862 kb on - strandat 200.862 kb on - strandat 200.971 kb on + strand, within ABZR87_RS17185at 200.971 kb on + strand, within ABZR87_RS17185at 201.499 kb on + strand, within ABZR87_RS17185at 201.500 kb on - strand, within ABZR87_RS17185at 201.500 kb on - strand, within ABZR87_RS17185at 201.500 kb on - strand, within ABZR87_RS17185at 201.598 kb on + strand, within ABZR87_RS17185at 201.598 kb on + strand, within ABZR87_RS17185at 201.598 kb on + strand, within ABZR87_RS17185at 201.598 kb on + strand, within ABZR87_RS17185at 201.599 kb on - strand, within ABZR87_RS17185at 201.599 kb on - strand, within ABZR87_RS17185at 201.599 kb on - strand, within ABZR87_RS17185at 201.599 kb on - strand, within ABZR87_RS17185at 201.599 kb on - strand, within ABZR87_RS17185at 201.648 kb on + strand, within ABZR87_RS17185at 201.648 kb on + strand, within ABZR87_RS17185at 201.649 kb on - strand, within ABZR87_RS17185at 201.747 kb on + strandat 201.747 kb on + strandat 201.747 kb on + strandat 201.747 kb on + strandat 201.747 kb on + strandat 201.748 kb on - strandat 201.748 kb on - strandat 201.748 kb on - strandat 201.748 kb on - strandat 201.748 kb on - strandat 201.748 kb on - strandat 201.920 kb on + strandat 202.026 kb on - strand, within ABZR87_RS17190at 202.172 kb on + strand, within ABZR87_RS17190at 202.172 kb on + strand, within ABZR87_RS17190at 202.172 kb on + strand, within ABZR87_RS17190at 202.172 kb on + strand, within ABZR87_RS17190at 202.172 kb on + strand, within ABZR87_RS17190at 202.173 kb on - strand, within ABZR87_RS17190at 202.173 kb on - strand, within ABZR87_RS17190at 202.173 kb on - strand, within ABZR87_RS17190at 202.173 kb on - strand, within ABZR87_RS17190at 202.181 kb on - strand, within ABZR87_RS17190at 202.343 kb on + strand, within ABZR87_RS17190at 202.344 kb on - strand, within ABZR87_RS17190at 202.370 kb on + strand, within ABZR87_RS17190at 202.370 kb on + strand, within ABZR87_RS17190at 202.370 kb on + strand, within ABZR87_RS17190at 202.371 kb on - strand, within ABZR87_RS17190at 202.374 kb on - strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.535 kb on + strand, within ABZR87_RS17190at 202.536 kb on - strand, within ABZR87_RS17190at 202.536 kb on - strand, within ABZR87_RS17190at 202.536 kb on - strand, within ABZR87_RS17190at 202.610 kb on + strand, within ABZR87_RS17190at 202.610 kb on + strand, within ABZR87_RS17190at 202.611 kb on - strand, within ABZR87_RS17190at 202.622 kb on + strand, within ABZR87_RS17190at 202.622 kb on + strand, within ABZR87_RS17190at 202.623 kb on - strand, within ABZR87_RS17190

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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199,926 + -0.7
199,927 - -1.1
199,927 - +1.5
199,968 + +0.6
200,061 + -0.4
200,061 + +1.1
200,062 - -2.0
200,238 + ABZR87_RS17180 0.32 -0.6
200,246 + ABZR87_RS17180 0.33 -1.0
200,246 + ABZR87_RS17180 0.33 +6.0
200,246 + ABZR87_RS17180 0.33 +0.7
200,247 - ABZR87_RS17180 0.33 -0.2
200,303 + ABZR87_RS17180 0.40 -0.8
200,303 + ABZR87_RS17180 0.40 +0.3
200,304 - ABZR87_RS17180 0.40 -1.5
200,391 + ABZR87_RS17180 0.52 +0.6
200,547 + ABZR87_RS17180 0.73 +0.6
200,548 - ABZR87_RS17180 0.73 +1.0
200,701 - -1.1
200,764 - +1.0
200,764 - +0.9
200,793 + +0.6
200,793 + -0.3
200,793 + -0.4
200,794 - -1.6
200,794 - +2.3
200,794 - -0.1
200,861 + -0.1
200,861 + -2.5
200,861 + +0.1
200,861 + +1.5
200,861 + -1.2
200,861 + -0.9
200,862 - -1.5
200,862 - -0.4
200,862 - +1.1
200,862 - +0.7
200,971 + ABZR87_RS17185 0.11 -1.0
200,971 + ABZR87_RS17185 0.11 -1.9
201,499 + ABZR87_RS17185 0.68 -1.9
201,500 - ABZR87_RS17185 0.68 -0.4
201,500 - ABZR87_RS17185 0.68 -2.5
201,500 - ABZR87_RS17185 0.68 -0.2
201,598 + ABZR87_RS17185 0.79 -1.5
201,598 + ABZR87_RS17185 0.79 -1.0
201,598 + ABZR87_RS17185 0.79 -1.0
201,598 + ABZR87_RS17185 0.79 +0.1
201,599 - ABZR87_RS17185 0.79 +0.9
201,599 - ABZR87_RS17185 0.79 -0.1
201,599 - ABZR87_RS17185 0.79 -1.1
201,599 - ABZR87_RS17185 0.79 -0.5
201,599 - ABZR87_RS17185 0.79 -2.0
201,648 + ABZR87_RS17185 0.84 -1.1
201,648 + ABZR87_RS17185 0.84 -2.1
201,649 - ABZR87_RS17185 0.84 -0.1
201,747 + +0.1
201,747 + -2.2
201,747 + -1.4
201,747 + +0.3
201,747 + +1.0
201,748 - -1.4
201,748 - -0.3
201,748 - -0.2
201,748 - -1.0
201,748 - +1.3
201,748 - +0.8
201,920 + -1.3
202,026 - ABZR87_RS17190 0.14 +2.2
202,172 + ABZR87_RS17190 0.26 -1.2
202,172 + ABZR87_RS17190 0.26 -0.4
202,172 + ABZR87_RS17190 0.26 -0.5
202,172 + ABZR87_RS17190 0.26 -0.4
202,172 + ABZR87_RS17190 0.26 -2.4
202,173 - ABZR87_RS17190 0.26 +1.3
202,173 - ABZR87_RS17190 0.26 -0.5
202,173 - ABZR87_RS17190 0.26 -0.0
202,173 - ABZR87_RS17190 0.26 -0.6
202,181 - ABZR87_RS17190 0.27 -0.9
202,343 + ABZR87_RS17190 0.40 +0.7
202,344 - ABZR87_RS17190 0.40 +0.1
202,370 + ABZR87_RS17190 0.42 +0.7
202,370 + ABZR87_RS17190 0.42 -0.8
202,370 + ABZR87_RS17190 0.42 +1.2
202,371 - ABZR87_RS17190 0.42 -0.7
202,374 - ABZR87_RS17190 0.42 -1.0
202,535 + ABZR87_RS17190 0.55 -1.6
202,535 + ABZR87_RS17190 0.55 +1.9
202,535 + ABZR87_RS17190 0.55 -1.3
202,535 + ABZR87_RS17190 0.55 +2.5
202,535 + ABZR87_RS17190 0.55 +1.6
202,535 + ABZR87_RS17190 0.55 -1.5
202,535 + ABZR87_RS17190 0.55 +0.2
202,535 + ABZR87_RS17190 0.55 +0.7
202,535 + ABZR87_RS17190 0.55 +0.7
202,535 + ABZR87_RS17190 0.55 +1.5
202,535 + ABZR87_RS17190 0.55 -0.0
202,535 + ABZR87_RS17190 0.55 +0.2
202,535 + ABZR87_RS17190 0.55 +0.6
202,535 + ABZR87_RS17190 0.55 -1.6
202,536 - ABZR87_RS17190 0.55 -0.5
202,536 - ABZR87_RS17190 0.55 -1.7
202,536 - ABZR87_RS17190 0.55 +0.9
202,610 + ABZR87_RS17190 0.61 -0.3
202,610 + ABZR87_RS17190 0.61 +1.9
202,611 - ABZR87_RS17190 0.61 +0.1
202,622 + ABZR87_RS17190 0.62 +0.3
202,622 + ABZR87_RS17190 0.62 -0.4
202,623 - ABZR87_RS17190 0.62 -0.1

Or see this region's nucleotide sequence