Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13080

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
2,775,590	+		ABZR87_RS13070	0.84	+0.3
2,775,603	-		ABZR87_RS13070	0.84	+1.9
2,775,603	-		ABZR87_RS13070	0.84	-0.2
2,775,615	+		ABZR87_RS13070	0.85	-0.4
2,775,615	+		ABZR87_RS13070	0.85	-1.2
2,775,741	+				-0.0
2,775,742	-				+0.2
2,775,753	+				-0.9
2,775,753	+				-0.1
2,775,753	+				-0.4
2,775,754	-				-0.5
2,775,782	-				+1.9
2,775,808	-				-0.5
2,775,865	+				+1.2
2,775,866	-				+2.6
2,775,866	-				+0.2
2,775,888	+				+0.1
2,775,889	-				+0.3
2,775,889	-				-0.2
2,775,889	-				+0.3
2,775,947	+				-0.6
2,775,947	+				-1.2
2,775,947	+				+0.0
2,775,948	-				+0.6
2,775,948	-				+1.4
2,775,948	-				+1.4
2,775,989	+				-1.7
2,775,989	+				+2.1
2,775,989	+				+0.1
2,775,989	+				+0.4
2,775,989	+				+1.3
2,775,989	+				+0.7
2,775,990	-				-0.1
2,775,990	-				-1.5
2,775,990	-				-1.4
2,776,030	+				+0.7
2,776,030	+				-2.7
2,776,030	+				-0.9
2,776,030	+				-0.2
2,776,031	-				+0.1
2,776,075	+				-0.5
2,776,075	+				-0.3
2,776,075	+				-1.2
2,776,076	-				-0.3
2,776,076	-				+0.9
2,776,110	+		ABZR87_RS13075	0.17	-0.1
2,776,110	+		ABZR87_RS13075	0.17	-0.7
2,776,111	-		ABZR87_RS13075	0.17	+0.6
2,776,111	-		ABZR87_RS13075	0.17	+0.4
2,776,123	-		ABZR87_RS13075	0.19	+0.2
2,776,156	+		ABZR87_RS13075	0.26	-0.2
2,776,156	+		ABZR87_RS13075	0.26	-1.5
2,776,156	+		ABZR87_RS13075	0.26	-0.2
2,776,157	-		ABZR87_RS13075	0.26	-0.6
2,776,157	-		ABZR87_RS13075	0.26	-0.3
2,776,157	-		ABZR87_RS13075	0.26	+1.0
2,776,215	+		ABZR87_RS13075	0.38	-0.2
2,776,215	+		ABZR87_RS13075	0.38	-0.5
2,776,216	-		ABZR87_RS13075	0.38	+0.5
2,776,216	-		ABZR87_RS13075	0.38	-0.4
2,776,259	+		ABZR87_RS13075	0.47	+1.1
2,776,259	+		ABZR87_RS13075	0.47	-3.1
2,776,259	+		ABZR87_RS13075	0.47	-2.3
2,776,260	-		ABZR87_RS13075	0.48	+0.1
2,776,274	+		ABZR87_RS13075	0.50	+0.3
2,776,410	+		ABZR87_RS13075	0.78	+1.8
2,776,410	+		ABZR87_RS13075	0.78	+1.8
2,776,410	+		ABZR87_RS13075	0.78	-0.3
2,776,411	-		ABZR87_RS13075	0.79	+0.4
2,776,411	-		ABZR87_RS13075	0.79	-0.6
2,776,411	-		ABZR87_RS13075	0.79	-0.6
2,776,466	-				+1.6
2,776,466	-				-0.3
2,776,498	+				+0.2
2,776,498	+				+1.3
2,776,498	+				-1.0
2,776,499	-				+0.4
2,776,508	+				+0.6
2,776,508	+				-1.5
2,776,508	+				+1.1
2,776,552	-				-1.2
2,776,602	+		ABZR87_RS13080	0.19	+0.4
2,776,632	+		ABZR87_RS13080	0.25	+0.4
2,776,632	+		ABZR87_RS13080	0.25	-0.1
2,776,632	+		ABZR87_RS13080	0.25	-0.2
2,776,633	-		ABZR87_RS13080	0.25	+0.5
2,776,633	-		ABZR87_RS13080	0.25	-2.3
2,776,633	-		ABZR87_RS13080	0.25	-2.0
2,776,633	-		ABZR87_RS13080	0.25	+1.9
2,776,644	+		ABZR87_RS13080	0.28	+0.4
2,776,644	+		ABZR87_RS13080	0.28	-0.6
2,776,645	-		ABZR87_RS13080	0.28	-1.4
2,776,724	+		ABZR87_RS13080	0.44	-1.1
2,776,724	+		ABZR87_RS13080	0.44	-3.1
2,776,725	-		ABZR87_RS13080	0.44	-0.5
2,776,725	-		ABZR87_RS13080	0.44	+0.8
2,776,762	+		ABZR87_RS13080	0.52	-0.1
2,776,763	-		ABZR87_RS13080	0.52	-1.8
2,776,763	-		ABZR87_RS13080	0.52	+0.1
2,776,763	-		ABZR87_RS13080	0.52	+0.4
2,776,763	-		ABZR87_RS13080	0.52	-0.8
2,776,763	-		ABZR87_RS13080	0.52	-1.5
2,776,773	+		ABZR87_RS13080	0.54	+0.0
2,776,773	+		ABZR87_RS13080	0.54	+0.2
2,776,774	-		ABZR87_RS13080	0.54	+0.4
2,776,786	+		ABZR87_RS13080	0.57	-2.5
2,776,827	+		ABZR87_RS13080	0.65	-2.1
2,776,827	+		ABZR87_RS13080	0.65	-0.4
2,776,827	+		ABZR87_RS13080	0.65	-0.4
2,776,828	-		ABZR87_RS13080	0.66	-0.1
2,776,860	-		ABZR87_RS13080	0.72	+0.0
2,776,918	+		ABZR87_RS13080	0.84	-0.8
2,776,919	-		ABZR87_RS13080	0.84	-0.4
2,776,919	-		ABZR87_RS13080	0.84	-1.7
2,776,919	-		ABZR87_RS13080	0.84	-1.2
2,776,919	-		ABZR87_RS13080	0.84	-1.6
2,776,952	+				-0.3
2,776,952	+				-2.7
2,776,952	+				-1.0
2,776,953	-				+3.0
2,776,953	-				+0.8
2,776,953	-				+0.0
2,776,953	-				-0.0
2,777,002	+				-2.1
2,777,002	+				+0.4
2,777,002	+				-0.8
2,777,003	-				+1.1
2,777,003	-				-0.2
2,777,033	+				-1.1
2,777,033	+				-0.2
2,777,033	+				+1.1
2,777,033	+				+0.8
2,777,033	+				-1.0
2,777,033	+				-0.9
2,777,034	-				-0.7
2,777,034	-				-0.1
2,777,036	+				-1.0
2,777,036	+				+1.3
2,777,036	+				+2.0
2,777,036	+				+0.8
2,777,037	-				-0.4
2,777,037	-				-3.5
2,777,050	-				+1.1
2,777,146	-				-1.2
2,777,146	-				+0.7
2,777,146	-				+1.1
2,777,146	-				-1.2
2,777,147	+				+0.2
2,777,147	+				-0.4
2,777,147	+				-0.2
2,777,147	+				+2.1
2,777,147	+				-1.4
2,777,165	-				+1.3
2,777,172	+				+0.6
2,777,173	-				+1.6
2,777,173	-				+1.3
2,777,173	-				+1.6
2,777,219	-				-1.5
2,777,219	-				-2.3
2,777,219	-				-0.9
2,777,219	-				+0.7
2,777,260	+				-0.6
2,777,260	+				+0.5
2,777,260	+				-0.3
2,777,260	+				-0.9
2,777,261	-				+1.0
2,777,261	-				-0.8
2,777,261	-				+0.1
2,777,319	+				-0.4
2,777,320	-				-2.3
2,777,355	+				+1.2
2,777,355	+				-0.2
2,777,355	+				-1.4
2,777,356	-				+0.2
2,777,356	-				+0.5
2,777,356	-				-0.6
2,777,356	-				+0.1
2,777,359	+				-0.5
2,777,359	+				+0.1
2,777,359	+				+1.1
2,777,359	+				-1.9
2,777,359	+				-1.2
2,777,359	+				+0.6
2,777,360	-				-1.9
2,777,360	-				-1.9
2,777,360	-				-0.8
2,777,435	+		ABZR87_RS13085	0.13	+0.7
2,777,435	+		ABZR87_RS13085	0.13	+1.2
2,777,435	+		ABZR87_RS13085	0.13	+0.4
2,777,435	+		ABZR87_RS13085	0.13	-1.7
2,777,436	-		ABZR87_RS13085	0.13	-0.2
2,777,436	-		ABZR87_RS13085	0.13	-0.7
2,777,564	+		ABZR87_RS13085	0.36	+1.6
2,777,565	-		ABZR87_RS13085	0.37	-1.9
2,777,677	+		ABZR87_RS13085	0.57	-0.8
2,777,678	-		ABZR87_RS13085	0.57	+1.0
2,777,890	+				-0.5
2,777,890	+				-1.5
2,777,907	+				+0.3
2,777,907	+				-0.1
2,777,907	+				+0.6
2,777,907	+				-0.0
2,777,908	-				+0.0
2,777,908	-				+0.6
2,777,908	-				-0.6
2,777,915	-				-0.5
2,777,925	-				+4.7
2,777,980	-				-0.3