Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05840

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05835 and ABZR87_RS05840 are separated by 19 nucleotidesABZR87_RS05840 and ABZR87_RS05845 overlap by 4 nucleotides ABZR87_RS05835: ABZR87_RS05835 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,244,222 to 1,244,881 _RS05835 ABZR87_RS05840: ABZR87_RS05840 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 1,244,901 to 1,245,926 _RS05840 ABZR87_RS05845: ABZR87_RS05845 - four-carbon acid sugar kinase family protein, at 1,245,923 to 1,247,044 _RS05845 Position (kb) 1244 1245 1246Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1243.911 kb on + strandat 1243.911 kb on + strandat 1243.912 kb on - strandat 1243.914 kb on + strandat 1243.914 kb on + strandat 1243.915 kb on - strandat 1243.915 kb on - strandat 1243.915 kb on - strandat 1243.915 kb on - strandat 1243.925 kb on + strandat 1243.926 kb on - strandat 1243.926 kb on - strandat 1244.254 kb on + strandat 1244.254 kb on + strandat 1244.255 kb on - strandat 1244.255 kb on - strandat 1244.371 kb on + strand, within ABZR87_RS05835at 1244.372 kb on - strand, within ABZR87_RS05835at 1244.372 kb on - strand, within ABZR87_RS05835at 1244.481 kb on - strand, within ABZR87_RS05835at 1244.583 kb on + strand, within ABZR87_RS05835at 1244.647 kb on - strand, within ABZR87_RS05835at 1244.647 kb on - strand, within ABZR87_RS05835at 1244.805 kb on + strand, within ABZR87_RS05835at 1244.805 kb on + strand, within ABZR87_RS05835at 1244.805 kb on + strand, within ABZR87_RS05835at 1244.805 kb on + strand, within ABZR87_RS05835at 1244.805 kb on + strand, within ABZR87_RS05835at 1244.805 kb on + strand, within ABZR87_RS05835at 1244.805 kb on + strand, within ABZR87_RS05835at 1244.805 kb on + strand, within ABZR87_RS05835at 1244.805 kb on + strand, within ABZR87_RS05835at 1244.805 kb on + strand, within ABZR87_RS05835at 1244.805 kb on + strand, within ABZR87_RS05835at 1244.805 kb on + strand, within ABZR87_RS05835at 1244.805 kb on + strand, within ABZR87_RS05835at 1244.805 kb on + strand, within ABZR87_RS05835at 1244.806 kb on - strand, within ABZR87_RS05835at 1244.806 kb on - strand, within ABZR87_RS05835at 1244.806 kb on - strand, within ABZR87_RS05835at 1244.806 kb on - strand, within ABZR87_RS05835at 1244.810 kb on + strand, within ABZR87_RS05835at 1244.810 kb on + strand, within ABZR87_RS05835at 1244.811 kb on - strand, within ABZR87_RS05835at 1244.835 kb on + strandat 1244.835 kb on + strandat 1244.836 kb on - strandat 1245.006 kb on + strand, within ABZR87_RS05840at 1245.006 kb on + strand, within ABZR87_RS05840at 1245.007 kb on - strand, within ABZR87_RS05840at 1245.007 kb on - strand, within ABZR87_RS05840at 1245.168 kb on + strand, within ABZR87_RS05840at 1245.169 kb on - strand, within ABZR87_RS05840at 1245.169 kb on - strand, within ABZR87_RS05840at 1245.169 kb on - strand, within ABZR87_RS05840at 1245.466 kb on + strand, within ABZR87_RS05840at 1245.466 kb on + strand, within ABZR87_RS05840at 1245.467 kb on - strand, within ABZR87_RS05840at 1245.467 kb on - strand, within ABZR87_RS05840at 1245.560 kb on + strand, within ABZR87_RS05840at 1245.606 kb on - strand, within ABZR87_RS05840at 1245.611 kb on + strand, within ABZR87_RS05840at 1245.612 kb on - strand, within ABZR87_RS05840at 1245.612 kb on - strand, within ABZR87_RS05840at 1245.736 kb on - strand, within ABZR87_RS05840at 1245.753 kb on + strand, within ABZR87_RS05840at 1245.754 kb on - strand, within ABZR87_RS05840at 1245.754 kb on - strand, within ABZR87_RS05840at 1245.754 kb on - strand, within ABZR87_RS05840at 1245.754 kb on - strand, within ABZR87_RS05840at 1245.792 kb on + strand, within ABZR87_RS05840at 1245.792 kb on + strand, within ABZR87_RS05840at 1245.944 kb on + strandat 1245.945 kb on - strandat 1245.945 kb on - strandat 1246.037 kb on + strand, within ABZR87_RS05845at 1246.037 kb on + strand, within ABZR87_RS05845at 1246.038 kb on - strand, within ABZR87_RS05845at 1246.100 kb on - strand, within ABZR87_RS05845at 1246.156 kb on + strand, within ABZR87_RS05845at 1246.156 kb on + strand, within ABZR87_RS05845at 1246.157 kb on - strand, within ABZR87_RS05845at 1246.157 kb on - strand, within ABZR87_RS05845at 1246.169 kb on + strand, within ABZR87_RS05845at 1246.169 kb on + strand, within ABZR87_RS05845at 1246.170 kb on - strand, within ABZR87_RS05845at 1246.178 kb on + strand, within ABZR87_RS05845at 1246.178 kb on + strand, within ABZR87_RS05845at 1246.179 kb on - strand, within ABZR87_RS05845at 1246.179 kb on - strand, within ABZR87_RS05845at 1246.217 kb on - strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.240 kb on + strand, within ABZR87_RS05845at 1246.241 kb on - strand, within ABZR87_RS05845at 1246.241 kb on - strand, within ABZR87_RS05845at 1246.241 kb on - strand, within ABZR87_RS05845at 1246.241 kb on - strand, within ABZR87_RS05845at 1246.508 kb on - strand, within ABZR87_RS05845at 1246.628 kb on + strand, within ABZR87_RS05845

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,243,911 + -0.7
1,243,911 + -2.2
1,243,912 - +0.5
1,243,914 + -0.6
1,243,914 + -0.7
1,243,915 - -1.1
1,243,915 - -0.2
1,243,915 - +1.2
1,243,915 - -0.4
1,243,925 + -0.4
1,243,926 - -0.8
1,243,926 - -0.7
1,244,254 + +0.0
1,244,254 + -1.2
1,244,255 - -1.0
1,244,255 - +0.0
1,244,371 + ABZR87_RS05835 0.23 +0.9
1,244,372 - ABZR87_RS05835 0.23 +0.5
1,244,372 - ABZR87_RS05835 0.23 -0.9
1,244,481 - ABZR87_RS05835 0.39 +0.2
1,244,583 + ABZR87_RS05835 0.55 +2.3
1,244,647 - ABZR87_RS05835 0.64 -0.8
1,244,647 - ABZR87_RS05835 0.64 -2.1
1,244,805 + ABZR87_RS05835 0.88 -2.2
1,244,805 + ABZR87_RS05835 0.88 +0.2
1,244,805 + ABZR87_RS05835 0.88 -0.0
1,244,805 + ABZR87_RS05835 0.88 -0.3
1,244,805 + ABZR87_RS05835 0.88 -0.5
1,244,805 + ABZR87_RS05835 0.88 +1.5
1,244,805 + ABZR87_RS05835 0.88 +0.8
1,244,805 + ABZR87_RS05835 0.88 -0.6
1,244,805 + ABZR87_RS05835 0.88 -0.2
1,244,805 + ABZR87_RS05835 0.88 +0.0
1,244,805 + ABZR87_RS05835 0.88 +3.9
1,244,805 + ABZR87_RS05835 0.88 +0.3
1,244,805 + ABZR87_RS05835 0.88 +0.8
1,244,805 + ABZR87_RS05835 0.88 +0.7
1,244,806 - ABZR87_RS05835 0.88 -1.0
1,244,806 - ABZR87_RS05835 0.88 +0.4
1,244,806 - ABZR87_RS05835 0.88 -2.0
1,244,806 - ABZR87_RS05835 0.88 +0.6
1,244,810 + ABZR87_RS05835 0.89 -1.8
1,244,810 + ABZR87_RS05835 0.89 +0.4
1,244,811 - ABZR87_RS05835 0.89 -0.3
1,244,835 + +0.4
1,244,835 + -0.3
1,244,836 - -2.4
1,245,006 + ABZR87_RS05840 0.10 -0.4
1,245,006 + ABZR87_RS05840 0.10 -0.7
1,245,007 - ABZR87_RS05840 0.10 +1.0
1,245,007 - ABZR87_RS05840 0.10 +0.5
1,245,168 + ABZR87_RS05840 0.26 +0.6
1,245,169 - ABZR87_RS05840 0.26 -0.6
1,245,169 - ABZR87_RS05840 0.26 -0.0
1,245,169 - ABZR87_RS05840 0.26 -1.1
1,245,466 + ABZR87_RS05840 0.55 +0.2
1,245,466 + ABZR87_RS05840 0.55 -0.2
1,245,467 - ABZR87_RS05840 0.55 +0.1
1,245,467 - ABZR87_RS05840 0.55 +1.5
1,245,560 + ABZR87_RS05840 0.64 -0.3
1,245,606 - ABZR87_RS05840 0.69 +0.8
1,245,611 + ABZR87_RS05840 0.69 -0.5
1,245,612 - ABZR87_RS05840 0.69 -1.8
1,245,612 - ABZR87_RS05840 0.69 +0.8
1,245,736 - ABZR87_RS05840 0.81 -0.3
1,245,753 + ABZR87_RS05840 0.83 -0.7
1,245,754 - ABZR87_RS05840 0.83 -1.9
1,245,754 - ABZR87_RS05840 0.83 +0.1
1,245,754 - ABZR87_RS05840 0.83 +0.2
1,245,754 - ABZR87_RS05840 0.83 +0.3
1,245,792 + ABZR87_RS05840 0.87 -0.2
1,245,792 + ABZR87_RS05840 0.87 -0.7
1,245,944 + +0.9
1,245,945 - -1.4
1,245,945 - +0.8
1,246,037 + ABZR87_RS05845 0.10 +0.1
1,246,037 + ABZR87_RS05845 0.10 +1.6
1,246,038 - ABZR87_RS05845 0.10 -0.1
1,246,100 - ABZR87_RS05845 0.16 +1.0
1,246,156 + ABZR87_RS05845 0.21 -0.0
1,246,156 + ABZR87_RS05845 0.21 -1.6
1,246,157 - ABZR87_RS05845 0.21 -0.3
1,246,157 - ABZR87_RS05845 0.21 -0.8
1,246,169 + ABZR87_RS05845 0.22 -0.8
1,246,169 + ABZR87_RS05845 0.22 -0.2
1,246,170 - ABZR87_RS05845 0.22 +1.4
1,246,178 + ABZR87_RS05845 0.23 +0.5
1,246,178 + ABZR87_RS05845 0.23 +2.4
1,246,179 - ABZR87_RS05845 0.23 +1.6
1,246,179 - ABZR87_RS05845 0.23 +1.5
1,246,217 - ABZR87_RS05845 0.26 +2.5
1,246,240 + ABZR87_RS05845 0.28 +2.3
1,246,240 + ABZR87_RS05845 0.28 +0.0
1,246,240 + ABZR87_RS05845 0.28 +0.3
1,246,240 + ABZR87_RS05845 0.28 +3.2
1,246,240 + ABZR87_RS05845 0.28 -0.2
1,246,240 + ABZR87_RS05845 0.28 +0.2
1,246,240 + ABZR87_RS05845 0.28 +0.3
1,246,240 + ABZR87_RS05845 0.28 -0.0
1,246,240 + ABZR87_RS05845 0.28 +1.0
1,246,240 + ABZR87_RS05845 0.28 -0.4
1,246,240 + ABZR87_RS05845 0.28 -0.7
1,246,240 + ABZR87_RS05845 0.28 -0.9
1,246,240 + ABZR87_RS05845 0.28 -1.7
1,246,240 + ABZR87_RS05845 0.28 -2.3
1,246,240 + ABZR87_RS05845 0.28 -2.3
1,246,240 + ABZR87_RS05845 0.28 +2.0
1,246,241 - ABZR87_RS05845 0.28 +0.0
1,246,241 - ABZR87_RS05845 0.28 +0.4
1,246,241 - ABZR87_RS05845 0.28 -0.5
1,246,241 - ABZR87_RS05845 0.28 +0.1
1,246,508 - ABZR87_RS05845 0.52 +0.4
1,246,628 + ABZR87_RS05845 0.63 +1.4

Or see this region's nucleotide sequence