Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04615

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS04610 and ABZR87_RS04615 are separated by 325 nucleotidesABZR87_RS04615 and ABZR87_RS04620 are separated by 225 nucleotides ABZR87_RS04610: ABZR87_RS04610 - DNA damage-inducible protein D, at 963,875 to 964,744 _RS04610 ABZR87_RS04615: ABZR87_RS04615 - Rrf2 family transcriptional regulator, at 965,070 to 965,543 _RS04615 ABZR87_RS04620: ABZR87_RS04620 - globin domain-containing protein, at 965,769 to 966,974 _RS04620 Position (kb) 965 966Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 964.218 kb on + strand, within ABZR87_RS04610at 964.219 kb on - strand, within ABZR87_RS04610at 964.219 kb on - strand, within ABZR87_RS04610at 964.219 kb on - strand, within ABZR87_RS04610at 964.242 kb on + strand, within ABZR87_RS04610at 964.242 kb on + strand, within ABZR87_RS04610at 964.395 kb on - strand, within ABZR87_RS04610at 964.404 kb on + strand, within ABZR87_RS04610at 964.461 kb on + strand, within ABZR87_RS04610at 964.461 kb on + strand, within ABZR87_RS04610at 964.461 kb on + strand, within ABZR87_RS04610at 964.462 kb on - strand, within ABZR87_RS04610at 964.462 kb on - strand, within ABZR87_RS04610at 964.470 kb on + strand, within ABZR87_RS04610at 964.629 kb on + strand, within ABZR87_RS04610at 964.630 kb on - strand, within ABZR87_RS04610at 964.630 kb on - strand, within ABZR87_RS04610at 964.630 kb on - strand, within ABZR87_RS04610at 964.712 kb on + strandat 964.712 kb on + strandat 964.712 kb on + strandat 964.712 kb on + strandat 964.712 kb on + strandat 964.712 kb on + strandat 964.713 kb on - strandat 964.713 kb on - strandat 964.713 kb on - strandat 964.713 kb on - strandat 964.713 kb on - strandat 964.713 kb on - strandat 964.713 kb on - strandat 964.713 kb on - strandat 964.713 kb on - strandat 964.713 kb on - strandat 964.713 kb on - strandat 964.758 kb on + strandat 964.758 kb on + strandat 964.759 kb on - strandat 964.838 kb on + strandat 964.838 kb on + strandat 964.839 kb on - strandat 964.915 kb on + strandat 965.017 kb on + strandat 965.017 kb on + strandat 965.018 kb on - strandat 965.018 kb on - strandat 965.018 kb on - strandat 965.018 kb on - strandat 965.033 kb on + strandat 965.033 kb on + strandat 965.034 kb on - strandat 965.034 kb on - strandat 965.034 kb on - strandat 965.168 kb on + strand, within ABZR87_RS04615at 965.168 kb on + strand, within ABZR87_RS04615at 965.169 kb on - strand, within ABZR87_RS04615at 965.169 kb on - strand, within ABZR87_RS04615at 965.170 kb on + strand, within ABZR87_RS04615at 965.171 kb on - strand, within ABZR87_RS04615at 965.171 kb on - strand, within ABZR87_RS04615at 965.192 kb on - strand, within ABZR87_RS04615at 965.192 kb on - strand, within ABZR87_RS04615at 965.497 kb on + strandat 965.497 kb on + strandat 965.497 kb on + strandat 965.497 kb on + strandat 965.497 kb on + strandat 965.498 kb on - strandat 965.498 kb on - strandat 965.498 kb on - strandat 965.498 kb on - strandat 965.519 kb on - strandat 965.527 kb on + strandat 965.563 kb on + strandat 965.564 kb on - strandat 965.564 kb on - strandat 965.564 kb on - strandat 965.653 kb on - strandat 965.732 kb on + strandat 965.754 kb on + strandat 965.754 kb on + strandat 965.793 kb on + strandat 965.793 kb on + strandat 965.853 kb on + strandat 965.853 kb on + strandat 965.853 kb on + strandat 965.853 kb on + strandat 965.854 kb on - strandat 965.959 kb on - strand, within ABZR87_RS04620at 965.959 kb on - strand, within ABZR87_RS04620at 965.959 kb on - strand, within ABZR87_RS04620at 966.051 kb on + strand, within ABZR87_RS04620at 966.145 kb on - strand, within ABZR87_RS04620at 966.189 kb on + strand, within ABZR87_RS04620at 966.190 kb on - strand, within ABZR87_RS04620at 966.195 kb on + strand, within ABZR87_RS04620at 966.196 kb on - strand, within ABZR87_RS04620at 966.196 kb on - strand, within ABZR87_RS04620at 966.327 kb on + strand, within ABZR87_RS04620at 966.327 kb on + strand, within ABZR87_RS04620at 966.327 kb on + strand, within ABZR87_RS04620at 966.327 kb on + strand, within ABZR87_RS04620at 966.327 kb on + strand, within ABZR87_RS04620at 966.327 kb on + strand, within ABZR87_RS04620at 966.327 kb on + strand, within ABZR87_RS04620at 966.328 kb on - strand, within ABZR87_RS04620at 966.378 kb on + strand, within ABZR87_RS04620at 966.379 kb on - strand, within ABZR87_RS04620at 966.379 kb on - strand, within ABZR87_RS04620

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
remove
964,218 + ABZR87_RS04610 0.39 -0.8
964,219 - ABZR87_RS04610 0.40 -1.4
964,219 - ABZR87_RS04610 0.40 +0.8
964,219 - ABZR87_RS04610 0.40 -1.6
964,242 + ABZR87_RS04610 0.42 -1.2
964,242 + ABZR87_RS04610 0.42 +0.5
964,395 - ABZR87_RS04610 0.60 +0.6
964,404 + ABZR87_RS04610 0.61 -0.4
964,461 + ABZR87_RS04610 0.67 -2.1
964,461 + ABZR87_RS04610 0.67 -1.1
964,461 + ABZR87_RS04610 0.67 -0.9
964,462 - ABZR87_RS04610 0.67 +0.0
964,462 - ABZR87_RS04610 0.67 -0.4
964,470 + ABZR87_RS04610 0.68 -1.2
964,629 + ABZR87_RS04610 0.87 -0.6
964,630 - ABZR87_RS04610 0.87 -1.9
964,630 - ABZR87_RS04610 0.87 -0.2
964,630 - ABZR87_RS04610 0.87 -0.6
964,712 + +0.9
964,712 + -0.4
964,712 + +0.7
964,712 + -1.4
964,712 + +0.6
964,712 + +1.4
964,713 - +1.4
964,713 - +0.5
964,713 - -0.5
964,713 - +1.1
964,713 - -0.2
964,713 - -0.2
964,713 - +0.8
964,713 - +0.5
964,713 - -0.9
964,713 - -0.1
964,713 - -0.4
964,758 + +0.6
964,758 + +0.1
964,759 - -0.4
964,838 + -2.3
964,838 + +0.7
964,839 - +0.0
964,915 + -1.2
965,017 + -0.7
965,017 + -2.7
965,018 - -0.0
965,018 - -1.0
965,018 - -2.0
965,018 - -0.0
965,033 + +0.6
965,033 + -1.5
965,034 - +1.2
965,034 - -0.2
965,034 - +0.0
965,168 + ABZR87_RS04615 0.21 -0.9
965,168 + ABZR87_RS04615 0.21 -1.6
965,169 - ABZR87_RS04615 0.21 -1.2
965,169 - ABZR87_RS04615 0.21 -4.4
965,170 + ABZR87_RS04615 0.21 -0.9
965,171 - ABZR87_RS04615 0.21 +0.5
965,171 - ABZR87_RS04615 0.21 -1.6
965,192 - ABZR87_RS04615 0.26 -2.9
965,192 - ABZR87_RS04615 0.26 +0.1
965,497 + -1.3
965,497 + -0.3
965,497 + -0.2
965,497 + +0.0
965,497 + +3.0
965,498 - -2.1
965,498 - -0.8
965,498 - -3.1
965,498 - -1.0
965,519 - -3.3
965,527 + +0.3
965,563 + +1.2
965,564 - +0.3
965,564 - -0.7
965,564 - -0.1
965,653 - -0.5
965,732 + +0.2
965,754 + -1.1
965,754 + -0.5
965,793 + -0.4
965,793 + +0.6
965,853 + -1.4
965,853 + +0.5
965,853 + -0.1
965,853 + -2.0
965,854 - +0.4
965,959 - ABZR87_RS04620 0.16 +0.2
965,959 - ABZR87_RS04620 0.16 -0.7
965,959 - ABZR87_RS04620 0.16 +1.1
966,051 + ABZR87_RS04620 0.23 -0.7
966,145 - ABZR87_RS04620 0.31 +0.6
966,189 + ABZR87_RS04620 0.35 -0.2
966,190 - ABZR87_RS04620 0.35 +0.4
966,195 + ABZR87_RS04620 0.35 -0.5
966,196 - ABZR87_RS04620 0.35 -1.9
966,196 - ABZR87_RS04620 0.35 -2.1
966,327 + ABZR87_RS04620 0.46 +0.6
966,327 + ABZR87_RS04620 0.46 -2.9
966,327 + ABZR87_RS04620 0.46 -1.6
966,327 + ABZR87_RS04620 0.46 -1.8
966,327 + ABZR87_RS04620 0.46 -1.1
966,327 + ABZR87_RS04620 0.46 -0.6
966,327 + ABZR87_RS04620 0.46 +1.1
966,328 - ABZR87_RS04620 0.46 -0.2
966,378 + ABZR87_RS04620 0.50 +0.9
966,379 - ABZR87_RS04620 0.51 +0.5
966,379 - ABZR87_RS04620 0.51 +0.2

Or see this region's nucleotide sequence