Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03690 and ABZR87_RS03695 are separated by 159 nucleotides ABZR87_RS03695 and ABZR87_RS03700 are separated by 19 nucleotides ABZR87_RS03700 and ABZR87_RS03705 are separated by 1 nucleotides ABZR87_RS03705 and ABZR87_RS03710 are separated by 313 nucleotides
ABZR87_RS03690: ABZR87_RS03690 - DUF305 domain-containing protein, at 769,255 to 769,770
_RS03690
ABZR87_RS03695: ABZR87_RS03695 - carboxymuconolactone decarboxylase family protein, at 769,930 to 770,262
_RS03695
ABZR87_RS03700: ABZR87_RS03700 - RNA polymerase sigma factor, at 770,282 to 770,839
_RS03700
ABZR87_RS03705: ABZR87_RS03705 - DUF2892 domain-containing protein, at 770,841 to 771,050
_RS03705
ABZR87_RS03710: ABZR87_RS03710 - Hsp70 family protein, at 771,364 to 772,617
_RS03710
Position (kb) 770
771 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 769.292 kb on + strand at 769.292 kb on + strand at 769.293 kb on - strand at 769.411 kb on + strand, within ABZR87_RS03690 at 769.411 kb on + strand, within ABZR87_RS03690 at 769.412 kb on - strand, within ABZR87_RS03690 at 769.425 kb on + strand, within ABZR87_RS03690 at 769.425 kb on + strand, within ABZR87_RS03690 at 769.425 kb on + strand, within ABZR87_RS03690 at 769.425 kb on + strand, within ABZR87_RS03690 at 769.426 kb on - strand, within ABZR87_RS03690 at 769.426 kb on - strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.488 kb on - strand, within ABZR87_RS03690 at 769.488 kb on - strand, within ABZR87_RS03690 at 769.488 kb on - strand, within ABZR87_RS03690 at 769.592 kb on + strand, within ABZR87_RS03690 at 769.592 kb on + strand, within ABZR87_RS03690 at 769.592 kb on + strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.675 kb on + strand, within ABZR87_RS03690 at 769.675 kb on + strand, within ABZR87_RS03690 at 769.676 kb on - strand, within ABZR87_RS03690 at 769.695 kb on - strand, within ABZR87_RS03690 at 769.695 kb on - strand, within ABZR87_RS03690 at 769.706 kb on + strand, within ABZR87_RS03690 at 769.706 kb on + strand, within ABZR87_RS03690 at 769.707 kb on - strand, within ABZR87_RS03690 at 769.707 kb on - strand, within ABZR87_RS03690 at 769.707 kb on - strand, within ABZR87_RS03690 at 769.763 kb on + strand at 769.763 kb on + strand at 769.764 kb on - strand at 769.764 kb on - strand at 769.764 kb on - strand at 769.764 kb on - strand at 769.764 kb on - strand at 769.764 kb on - strand at 769.852 kb on + strand at 769.853 kb on - strand at 769.853 kb on - strand at 769.853 kb on - strand at 769.853 kb on - strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.932 kb on - strand at 769.932 kb on - strand at 769.932 kb on - strand at 769.932 kb on - strand at 769.932 kb on - strand at 769.932 kb on - strand at 769.932 kb on - strand at 769.932 kb on - strand at 770.034 kb on + strand, within ABZR87_RS03695 at 770.062 kb on - strand, within ABZR87_RS03695 at 770.062 kb on - strand, within ABZR87_RS03695 at 770.062 kb on - strand, within ABZR87_RS03695 at 770.078 kb on + strand, within ABZR87_RS03695 at 770.078 kb on + strand, within ABZR87_RS03695 at 770.078 kb on + strand, within ABZR87_RS03695 at 770.078 kb on + strand, within ABZR87_RS03695 at 770.078 kb on + strand, within ABZR87_RS03695 at 770.079 kb on - strand, within ABZR87_RS03695 at 770.091 kb on + strand, within ABZR87_RS03695 at 770.092 kb on - strand, within ABZR87_RS03695 at 770.092 kb on - strand, within ABZR87_RS03695 at 770.092 kb on - strand, within ABZR87_RS03695 at 770.178 kb on + strand, within ABZR87_RS03695 at 770.249 kb on + strand at 770.249 kb on + strand at 770.250 kb on - strand at 770.250 kb on - strand at 770.284 kb on - strand at 770.320 kb on - strand at 770.399 kb on + strand, within ABZR87_RS03700 at 770.399 kb on + strand, within ABZR87_RS03700 at 770.399 kb on + strand, within ABZR87_RS03700 at 770.399 kb on + strand, within ABZR87_RS03700 at 770.400 kb on - strand, within ABZR87_RS03700 at 770.400 kb on - strand, within ABZR87_RS03700 at 770.400 kb on - strand, within ABZR87_RS03700 at 770.464 kb on - strand, within ABZR87_RS03700 at 770.464 kb on - strand, within ABZR87_RS03700 at 770.464 kb on - strand, within ABZR87_RS03700 at 770.464 kb on - strand, within ABZR87_RS03700 at 770.464 kb on - strand, within ABZR87_RS03700 at 770.464 kb on - strand, within ABZR87_RS03700 at 770.464 kb on - strand, within ABZR87_RS03700 at 770.556 kb on + strand, within ABZR87_RS03700 at 770.556 kb on + strand, within ABZR87_RS03700 at 770.556 kb on + strand, within ABZR87_RS03700 at 770.557 kb on - strand, within ABZR87_RS03700 at 770.584 kb on + strand, within ABZR87_RS03700 at 770.585 kb on - strand, within ABZR87_RS03700 at 770.621 kb on + strand, within ABZR87_RS03700 at 770.622 kb on - strand, within ABZR87_RS03700 at 770.622 kb on - strand, within ABZR87_RS03700 at 770.652 kb on - strand, within ABZR87_RS03700 at 770.671 kb on - strand, within ABZR87_RS03700 at 770.747 kb on + strand, within ABZR87_RS03700 at 770.747 kb on + strand, within ABZR87_RS03700 at 770.795 kb on - strand at 770.815 kb on + strand at 770.815 kb on + strand at 770.815 kb on + strand at 770.815 kb on + strand at 770.815 kb on + strand at 770.815 kb on + strand at 770.815 kb on + strand at 770.816 kb on - strand at 770.816 kb on - strand at 770.816 kb on - strand at 770.816 kb on - strand at 770.816 kb on - strand at 770.850 kb on + strand at 770.851 kb on - strand at 770.972 kb on + strand, within ABZR87_RS03705 at 770.973 kb on - strand, within ABZR87_RS03705 at 771.043 kb on + strand at 771.043 kb on + strand at 771.043 kb on + strand at 771.043 kb on + strand at 771.044 kb on - strand at 771.044 kb on - strand at 771.044 kb on - strand at 771.050 kb on + strand at 771.050 kb on + strand at 771.050 kb on + strand at 771.050 kb on + strand at 771.050 kb on + strand at 771.050 kb on + strand at 771.050 kb on + strand at 771.050 kb on + strand at 771.050 kb on + strand at 771.050 kb on + strand at 771.051 kb on - strand at 771.051 kb on - strand at 771.051 kb on - strand at 771.051 kb on - strand at 771.051 kb on - strand at 771.051 kb on - strand at 771.051 kb on - strand at 771.051 kb on - strand at 771.051 kb on - strand at 771.051 kb on - strand at 771.088 kb on + strand at 771.088 kb on + strand at 771.088 kb on + strand at 771.088 kb on + strand at 771.089 kb on - strand at 771.089 kb on - strand at 771.089 kb on - strand at 771.089 kb on - strand at 771.089 kb on - strand at 771.089 kb on - strand at 771.125 kb on + strand at 771.129 kb on + strand at 771.130 kb on - strand at 771.130 kb on - strand at 771.130 kb on - strand at 771.130 kb on - strand at 771.130 kb on - strand at 771.152 kb on + strand at 771.152 kb on + strand at 771.152 kb on + strand at 771.152 kb on + strand at 771.152 kb on + strand at 771.152 kb on + strand at 771.152 kb on + strand at 771.152 kb on + strand at 771.152 kb on + strand at 771.152 kb on + strand at 771.152 kb on + strand at 771.153 kb on - strand at 771.153 kb on - strand at 771.153 kb on - strand at 771.153 kb on - strand at 771.153 kb on - strand at 771.153 kb on - strand at 771.153 kb on - strand at 771.153 kb on - strand at 771.153 kb on - strand at 771.153 kb on - strand at 771.153 kb on - strand at 771.153 kb on - strand at 771.153 kb on - strand at 771.153 kb on - strand at 771.153 kb on - strand at 771.198 kb on + strand at 771.198 kb on + strand at 771.198 kb on + strand at 771.198 kb on + strand at 771.198 kb on + strand at 771.199 kb on - strand at 771.199 kb on - strand at 771.199 kb on - strand at 771.199 kb on - strand at 771.199 kb on - strand at 771.199 kb on - strand at 771.275 kb on + strand at 771.275 kb on + strand at 771.275 kb on + strand at 771.276 kb on - strand at 771.276 kb on - strand at 771.276 kb on - strand at 771.276 kb on - strand at 771.276 kb on - strand at 771.280 kb on + strand at 771.280 kb on + strand at 771.280 kb on + strand at 771.280 kb on + strand at 771.281 kb on - strand at 771.314 kb on + strand at 771.363 kb on + strand at 771.363 kb on + strand at 771.363 kb on + strand at 771.363 kb on + strand at 771.363 kb on + strand at 771.364 kb on - strand at 771.364 kb on - strand at 771.364 kb on - strand at 771.517 kb on + strand, within ABZR87_RS03710 at 771.517 kb on + strand, within ABZR87_RS03710 at 771.518 kb on - strand, within ABZR87_RS03710 at 771.541 kb on + strand, within ABZR87_RS03710 at 771.541 kb on + strand, within ABZR87_RS03710 at 771.542 kb on - strand, within ABZR87_RS03710 at 771.554 kb on - strand, within ABZR87_RS03710 at 771.839 kb on - strand, within ABZR87_RS03710 at 771.839 kb on - strand, within ABZR87_RS03710
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 769,292 + -0.3 769,292 + +3.0 769,293 - +0.7 769,411 + ABZR87_RS03690 0.30 -0.9 769,411 + ABZR87_RS03690 0.30 +0.0 769,412 - ABZR87_RS03690 0.30 +0.8 769,425 + ABZR87_RS03690 0.33 -0.2 769,425 + ABZR87_RS03690 0.33 -0.8 769,425 + ABZR87_RS03690 0.33 -0.2 769,425 + ABZR87_RS03690 0.33 +3.0 769,426 - ABZR87_RS03690 0.33 +0.2 769,426 - ABZR87_RS03690 0.33 -1.0 769,487 + ABZR87_RS03690 0.45 -1.0 769,487 + ABZR87_RS03690 0.45 -2.6 769,487 + ABZR87_RS03690 0.45 -0.5 769,487 + ABZR87_RS03690 0.45 -0.2 769,487 + ABZR87_RS03690 0.45 +0.9 769,487 + ABZR87_RS03690 0.45 +0.2 769,487 + ABZR87_RS03690 0.45 +0.3 769,488 - ABZR87_RS03690 0.45 -0.8 769,488 - ABZR87_RS03690 0.45 +0.8 769,488 - ABZR87_RS03690 0.45 -0.0 769,592 + ABZR87_RS03690 0.65 +1.1 769,592 + ABZR87_RS03690 0.65 +0.2 769,592 + ABZR87_RS03690 0.65 +0.1 769,593 - ABZR87_RS03690 0.66 +0.2 769,593 - ABZR87_RS03690 0.66 +1.1 769,593 - ABZR87_RS03690 0.66 -0.2 769,593 - ABZR87_RS03690 0.66 +0.7 769,593 - ABZR87_RS03690 0.66 -0.1 769,593 - ABZR87_RS03690 0.66 +1.1 769,593 - ABZR87_RS03690 0.66 -1.0 769,675 + ABZR87_RS03690 0.81 -0.5 769,675 + ABZR87_RS03690 0.81 -0.3 769,676 - ABZR87_RS03690 0.82 +0.8 769,695 - ABZR87_RS03690 0.85 +0.7 769,695 - ABZR87_RS03690 0.85 -0.5 769,706 + ABZR87_RS03690 0.87 -2.3 769,706 + ABZR87_RS03690 0.87 +0.7 769,707 - ABZR87_RS03690 0.88 -1.1 769,707 - ABZR87_RS03690 0.88 -2.6 769,707 - ABZR87_RS03690 0.88 -0.6 769,763 + +0.5 769,763 + -0.9 769,764 - +2.0 769,764 - +0.5 769,764 - -0.6 769,764 - +0.4 769,764 - +1.7 769,764 - -0.8 769,852 + -0.7 769,853 - -0.3 769,853 - +1.2 769,853 - -0.1 769,853 - +0.4 769,931 + -2.1 769,931 + +0.0 769,931 + +0.3 769,931 + -1.0 769,931 + -0.2 769,931 + +1.0 769,931 + -1.1 769,931 + -3.1 769,931 + +0.4 769,931 + -0.0 769,931 + -0.1 769,931 + +0.5 769,931 + -0.3 769,932 - -2.0 769,932 - -2.4 769,932 - +1.1 769,932 - -0.4 769,932 - +0.3 769,932 - -0.2 769,932 - -0.8 769,932 - +4.7 770,034 + ABZR87_RS03695 0.31 +0.7 770,062 - ABZR87_RS03695 0.40 -0.0 770,062 - ABZR87_RS03695 0.40 -0.7 770,062 - ABZR87_RS03695 0.40 +0.9 770,078 + ABZR87_RS03695 0.44 -0.8 770,078 + ABZR87_RS03695 0.44 -1.2 770,078 + ABZR87_RS03695 0.44 -1.2 770,078 + ABZR87_RS03695 0.44 +1.4 770,078 + ABZR87_RS03695 0.44 +2.0 770,079 - ABZR87_RS03695 0.45 +2.0 770,091 + ABZR87_RS03695 0.48 +0.4 770,092 - ABZR87_RS03695 0.49 -2.1 770,092 - ABZR87_RS03695 0.49 -0.1 770,092 - ABZR87_RS03695 0.49 -0.3 770,178 + ABZR87_RS03695 0.74 -0.6 770,249 + +1.6 770,249 + -0.2 770,250 - -1.6 770,250 - -1.3 770,284 - +0.3 770,320 - +3.0 770,399 + ABZR87_RS03700 0.21 -0.9 770,399 + ABZR87_RS03700 0.21 -0.6 770,399 + ABZR87_RS03700 0.21 -0.1 770,399 + ABZR87_RS03700 0.21 +0.6 770,400 - ABZR87_RS03700 0.21 -0.5 770,400 - ABZR87_RS03700 0.21 -0.0 770,400 - ABZR87_RS03700 0.21 +0.2 770,464 - ABZR87_RS03700 0.33 -0.8 770,464 - ABZR87_RS03700 0.33 -1.1 770,464 - ABZR87_RS03700 0.33 -1.1 770,464 - ABZR87_RS03700 0.33 -1.3 770,464 - ABZR87_RS03700 0.33 +0.3 770,464 - ABZR87_RS03700 0.33 +0.7 770,464 - ABZR87_RS03700 0.33 +0.0 770,556 + ABZR87_RS03700 0.49 -2.1 770,556 + ABZR87_RS03700 0.49 -0.0 770,556 + ABZR87_RS03700 0.49 -0.3 770,557 - ABZR87_RS03700 0.49 -1.5 770,584 + ABZR87_RS03700 0.54 +0.8 770,585 - ABZR87_RS03700 0.54 -0.2 770,621 + ABZR87_RS03700 0.61 -1.8 770,622 - ABZR87_RS03700 0.61 +0.8 770,622 - ABZR87_RS03700 0.61 +1.3 770,652 - ABZR87_RS03700 0.66 -0.3 770,671 - ABZR87_RS03700 0.70 -0.9 770,747 + ABZR87_RS03700 0.83 +0.3 770,747 + ABZR87_RS03700 0.83 -0.5 770,795 - +0.5 770,815 + -0.6 770,815 + +0.6 770,815 + +0.3 770,815 + +1.5 770,815 + -2.2 770,815 + +1.2 770,815 + -3.1 770,816 - -0.4 770,816 - -0.7 770,816 - -0.9 770,816 - +0.6 770,816 - -2.2 770,850 + +0.8 770,851 - -0.2 770,972 + ABZR87_RS03705 0.62 +1.4 770,973 - ABZR87_RS03705 0.63 +2.3 771,043 + -0.1 771,043 + +4.3 771,043 + +0.5 771,043 + -2.3 771,044 - -0.4 771,044 - -0.2 771,044 - +0.2 771,050 + -2.2 771,050 + -0.2 771,050 + -2.1 771,050 + +1.0 771,050 + +1.4 771,050 + +1.3 771,050 + +1.5 771,050 + +1.4 771,050 + +2.0 771,050 + -1.2 771,051 - +0.6 771,051 - +0.4 771,051 - -0.6 771,051 - -2.0 771,051 - +0.4 771,051 - +0.7 771,051 - -0.2 771,051 - +2.2 771,051 - -1.3 771,051 - -0.6 771,088 + -1.8 771,088 + -1.3 771,088 + +0.6 771,088 + -1.9 771,089 - -0.4 771,089 - +0.5 771,089 - +0.2 771,089 - -0.9 771,089 - +1.4 771,089 - -1.9 771,125 + -0.4 771,129 + +0.1 771,130 - -0.1 771,130 - +0.6 771,130 - -0.4 771,130 - -0.3 771,130 - -0.4 771,152 + +0.7 771,152 + -0.6 771,152 + -2.7 771,152 + -2.6 771,152 + +1.7 771,152 + -0.1 771,152 + -0.8 771,152 + -1.2 771,152 + +0.1 771,152 + +0.4 771,152 + -0.2 771,153 - -1.5 771,153 - -1.8 771,153 - +0.0 771,153 - -2.1 771,153 - +0.9 771,153 - +0.8 771,153 - -0.6 771,153 - -0.2 771,153 - +0.0 771,153 - -0.2 771,153 - -0.4 771,153 - -0.0 771,153 - +0.1 771,153 - +0.2 771,153 - +0.7 771,198 + -0.5 771,198 + +0.0 771,198 + -0.3 771,198 + -1.0 771,198 + +0.9 771,199 - +0.0 771,199 - -0.2 771,199 - -1.4 771,199 - -0.3 771,199 - -0.2 771,199 - -0.4 771,275 + -0.8 771,275 + -0.0 771,275 + +1.3 771,276 - -1.4 771,276 - -1.7 771,276 - -1.9 771,276 - -3.1 771,276 - +0.9 771,280 + -0.2 771,280 + +0.2 771,280 + -2.5 771,280 + -0.3 771,281 - +0.2 771,314 + -0.3 771,363 + -0.0 771,363 + +1.9 771,363 + -0.4 771,363 + -0.1 771,363 + -0.3 771,364 - +0.4 771,364 - -0.2 771,364 - +0.8 771,517 + ABZR87_RS03710 0.12 +0.4 771,517 + ABZR87_RS03710 0.12 -0.3 771,518 - ABZR87_RS03710 0.12 +1.1 771,541 + ABZR87_RS03710 0.14 -1.3 771,541 + ABZR87_RS03710 0.14 -0.0 771,542 - ABZR87_RS03710 0.14 -1.2 771,554 - ABZR87_RS03710 0.15 +3.6 771,839 - ABZR87_RS03710 0.38 +1.6 771,839 - ABZR87_RS03710 0.38 -1.5
Or see this region's nucleotide sequence