Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03195

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS03190 and ABZR87_RS03195 are separated by 9 nucleotidesABZR87_RS03195 and ABZR87_RS03200 are separated by 238 nucleotidesABZR87_RS03200 and ABZR87_RS03205 are separated by 4 nucleotides ABZR87_RS03190: ABZR87_RS03190 - hypothetical protein, at 669,347 to 670,561 _RS03190 ABZR87_RS03195: ABZR87_RS03195 - cation diffusion facilitator family transporter, at 670,571 to 671,719 _RS03195 ABZR87_RS03200: ABZR87_RS03200 - response regulator transcription factor, at 671,958 to 672,623 _RS03200 ABZR87_RS03205: ABZR87_RS03205 - transporter substrate-binding domain-containing protein, at 672,628 to 676,935 _RS03205 Position (kb) 670 671 672Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 669.584 kb on + strand, within ABZR87_RS03190at 669.584 kb on + strand, within ABZR87_RS03190at 669.584 kb on + strand, within ABZR87_RS03190at 669.584 kb on + strand, within ABZR87_RS03190at 669.585 kb on - strand, within ABZR87_RS03190at 669.585 kb on - strand, within ABZR87_RS03190at 669.585 kb on - strand, within ABZR87_RS03190at 669.585 kb on - strand, within ABZR87_RS03190at 669.585 kb on - strand, within ABZR87_RS03190at 669.585 kb on - strand, within ABZR87_RS03190at 669.585 kb on - strand, within ABZR87_RS03190at 669.585 kb on - strand, within ABZR87_RS03190at 669.585 kb on - strand, within ABZR87_RS03190at 669.758 kb on + strand, within ABZR87_RS03190at 669.758 kb on + strand, within ABZR87_RS03190at 669.758 kb on + strand, within ABZR87_RS03190at 669.758 kb on + strand, within ABZR87_RS03190at 669.759 kb on - strand, within ABZR87_RS03190at 669.759 kb on - strand, within ABZR87_RS03190at 669.759 kb on - strand, within ABZR87_RS03190at 669.826 kb on + strand, within ABZR87_RS03190at 669.827 kb on - strand, within ABZR87_RS03190at 669.827 kb on - strand, within ABZR87_RS03190at 669.827 kb on - strand, within ABZR87_RS03190at 669.827 kb on - strand, within ABZR87_RS03190at 669.861 kb on - strand, within ABZR87_RS03190at 669.861 kb on - strand, within ABZR87_RS03190at 669.861 kb on - strand, within ABZR87_RS03190at 669.861 kb on - strand, within ABZR87_RS03190at 669.921 kb on - strand, within ABZR87_RS03190at 669.932 kb on + strand, within ABZR87_RS03190at 669.933 kb on - strand, within ABZR87_RS03190at 669.933 kb on - strand, within ABZR87_RS03190at 670.142 kb on + strand, within ABZR87_RS03190at 670.142 kb on + strand, within ABZR87_RS03190at 670.142 kb on + strand, within ABZR87_RS03190at 670.142 kb on + strand, within ABZR87_RS03190at 670.142 kb on + strand, within ABZR87_RS03190at 670.145 kb on + strand, within ABZR87_RS03190at 670.145 kb on + strand, within ABZR87_RS03190at 670.145 kb on + strand, within ABZR87_RS03190at 670.145 kb on + strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.146 kb on - strand, within ABZR87_RS03190at 670.151 kb on + strand, within ABZR87_RS03190at 670.151 kb on + strand, within ABZR87_RS03190at 670.151 kb on + strand, within ABZR87_RS03190at 670.151 kb on + strand, within ABZR87_RS03190at 670.151 kb on + strand, within ABZR87_RS03190at 670.152 kb on - strand, within ABZR87_RS03190at 670.152 kb on - strand, within ABZR87_RS03190at 670.152 kb on - strand, within ABZR87_RS03190at 670.152 kb on - strand, within ABZR87_RS03190at 670.152 kb on - strand, within ABZR87_RS03190at 670.152 kb on - strand, within ABZR87_RS03190at 670.152 kb on - strand, within ABZR87_RS03190at 670.185 kb on - strand, within ABZR87_RS03190at 670.261 kb on + strand, within ABZR87_RS03190at 670.261 kb on + strand, within ABZR87_RS03190at 670.261 kb on + strand, within ABZR87_RS03190at 670.261 kb on + strand, within ABZR87_RS03190at 670.262 kb on - strand, within ABZR87_RS03190at 670.262 kb on - strand, within ABZR87_RS03190at 670.319 kb on + strand, within ABZR87_RS03190at 670.319 kb on + strand, within ABZR87_RS03190at 670.320 kb on - strand, within ABZR87_RS03190at 670.320 kb on - strand, within ABZR87_RS03190at 670.320 kb on - strand, within ABZR87_RS03190at 670.322 kb on - strand, within ABZR87_RS03190at 670.322 kb on - strand, within ABZR87_RS03190at 670.322 kb on - strand, within ABZR87_RS03190at 670.322 kb on - strand, within ABZR87_RS03190at 670.399 kb on + strand, within ABZR87_RS03190at 670.399 kb on + strand, within ABZR87_RS03190at 670.400 kb on - strand, within ABZR87_RS03190at 670.704 kb on + strand, within ABZR87_RS03195at 670.704 kb on + strand, within ABZR87_RS03195at 670.704 kb on + strand, within ABZR87_RS03195at 670.704 kb on + strand, within ABZR87_RS03195at 670.704 kb on + strand, within ABZR87_RS03195at 670.704 kb on + strand, within ABZR87_RS03195at 670.704 kb on + strand, within ABZR87_RS03195at 670.704 kb on + strand, within ABZR87_RS03195at 670.704 kb on + strand, within ABZR87_RS03195at 670.704 kb on + strand, within ABZR87_RS03195at 670.705 kb on - strand, within ABZR87_RS03195at 670.705 kb on - strand, within ABZR87_RS03195at 670.705 kb on - strand, within ABZR87_RS03195at 670.705 kb on - strand, within ABZR87_RS03195at 670.705 kb on - strand, within ABZR87_RS03195at 670.705 kb on - strand, within ABZR87_RS03195at 670.864 kb on + strand, within ABZR87_RS03195at 670.864 kb on + strand, within ABZR87_RS03195at 670.864 kb on + strand, within ABZR87_RS03195at 670.864 kb on + strand, within ABZR87_RS03195at 670.864 kb on + strand, within ABZR87_RS03195at 670.864 kb on + strand, within ABZR87_RS03195at 670.864 kb on + strand, within ABZR87_RS03195at 670.865 kb on - strand, within ABZR87_RS03195at 670.865 kb on - strand, within ABZR87_RS03195at 670.865 kb on - strand, within ABZR87_RS03195at 670.946 kb on - strand, within ABZR87_RS03195at 671.166 kb on + strand, within ABZR87_RS03195at 671.166 kb on + strand, within ABZR87_RS03195at 671.167 kb on - strand, within ABZR87_RS03195at 671.167 kb on - strand, within ABZR87_RS03195at 671.167 kb on - strand, within ABZR87_RS03195at 671.167 kb on - strand, within ABZR87_RS03195at 671.289 kb on + strand, within ABZR87_RS03195at 671.289 kb on + strand, within ABZR87_RS03195at 671.290 kb on - strand, within ABZR87_RS03195at 671.290 kb on - strand, within ABZR87_RS03195at 671.290 kb on - strand, within ABZR87_RS03195at 671.290 kb on - strand, within ABZR87_RS03195at 671.290 kb on - strand, within ABZR87_RS03195at 671.476 kb on - strand, within ABZR87_RS03195at 671.476 kb on - strand, within ABZR87_RS03195at 671.476 kb on - strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.557 kb on + strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.558 kb on - strand, within ABZR87_RS03195at 671.860 kb on + strandat 671.860 kb on + strandat 671.863 kb on + strandat 671.864 kb on - strandat 671.936 kb on + strandat 671.936 kb on + strandat 671.936 kb on + strandat 671.936 kb on + strandat 671.937 kb on - strandat 671.937 kb on - strandat 671.937 kb on - strandat 671.937 kb on - strandat 672.130 kb on - strand, within ABZR87_RS03200at 672.130 kb on - strand, within ABZR87_RS03200at 672.345 kb on + strand, within ABZR87_RS03200at 672.345 kb on + strand, within ABZR87_RS03200at 672.346 kb on - strand, within ABZR87_RS03200at 672.346 kb on - strand, within ABZR87_RS03200at 672.346 kb on - strand, within ABZR87_RS03200at 672.346 kb on - strand, within ABZR87_RS03200at 672.456 kb on + strand, within ABZR87_RS03200at 672.456 kb on + strand, within ABZR87_RS03200at 672.456 kb on + strand, within ABZR87_RS03200at 672.457 kb on - strand, within ABZR87_RS03200at 672.457 kb on - strand, within ABZR87_RS03200at 672.457 kb on - strand, within ABZR87_RS03200at 672.457 kb on - strand, within ABZR87_RS03200at 672.457 kb on - strand, within ABZR87_RS03200at 672.457 kb on - strand, within ABZR87_RS03200at 672.457 kb on - strand, within ABZR87_RS03200

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
remove
669,584 + ABZR87_RS03190 0.20 -0.3
669,584 + ABZR87_RS03190 0.20 -0.3
669,584 + ABZR87_RS03190 0.20 -0.3
669,584 + ABZR87_RS03190 0.20 +0.7
669,585 - ABZR87_RS03190 0.20 +0.5
669,585 - ABZR87_RS03190 0.20 -3.2
669,585 - ABZR87_RS03190 0.20 -1.1
669,585 - ABZR87_RS03190 0.20 -0.6
669,585 - ABZR87_RS03190 0.20 -2.2
669,585 - ABZR87_RS03190 0.20 +0.6
669,585 - ABZR87_RS03190 0.20 -2.3
669,585 - ABZR87_RS03190 0.20 -0.8
669,585 - ABZR87_RS03190 0.20 +0.4
669,758 + ABZR87_RS03190 0.34 -0.1
669,758 + ABZR87_RS03190 0.34 -0.0
669,758 + ABZR87_RS03190 0.34 -0.3
669,758 + ABZR87_RS03190 0.34 +2.6
669,759 - ABZR87_RS03190 0.34 +1.0
669,759 - ABZR87_RS03190 0.34 -0.5
669,759 - ABZR87_RS03190 0.34 +0.4
669,826 + ABZR87_RS03190 0.39 -2.1
669,827 - ABZR87_RS03190 0.40 -1.1
669,827 - ABZR87_RS03190 0.40 +0.7
669,827 - ABZR87_RS03190 0.40 +0.6
669,827 - ABZR87_RS03190 0.40 +1.2
669,861 - ABZR87_RS03190 0.42 -1.9
669,861 - ABZR87_RS03190 0.42 +1.0
669,861 - ABZR87_RS03190 0.42 +4.1
669,861 - ABZR87_RS03190 0.42 -0.5
669,921 - ABZR87_RS03190 0.47 +1.3
669,932 + ABZR87_RS03190 0.48 -1.7
669,933 - ABZR87_RS03190 0.48 +0.2
669,933 - ABZR87_RS03190 0.48 +0.4
670,142 + ABZR87_RS03190 0.65 -2.6
670,142 + ABZR87_RS03190 0.65 -1.4
670,142 + ABZR87_RS03190 0.65 -0.9
670,142 + ABZR87_RS03190 0.65 +0.2
670,142 + ABZR87_RS03190 0.65 -1.0
670,145 + ABZR87_RS03190 0.66 -0.0
670,145 + ABZR87_RS03190 0.66 +0.2
670,145 + ABZR87_RS03190 0.66 +0.0
670,145 + ABZR87_RS03190 0.66 -0.1
670,146 - ABZR87_RS03190 0.66 +0.3
670,146 - ABZR87_RS03190 0.66 +0.5
670,146 - ABZR87_RS03190 0.66 -0.9
670,146 - ABZR87_RS03190 0.66 +0.7
670,146 - ABZR87_RS03190 0.66 -1.5
670,146 - ABZR87_RS03190 0.66 +1.5
670,146 - ABZR87_RS03190 0.66 -1.0
670,146 - ABZR87_RS03190 0.66 -0.6
670,146 - ABZR87_RS03190 0.66 -1.5
670,146 - ABZR87_RS03190 0.66 -1.3
670,146 - ABZR87_RS03190 0.66 +0.7
670,146 - ABZR87_RS03190 0.66 -0.1
670,151 + ABZR87_RS03190 0.66 +0.0
670,151 + ABZR87_RS03190 0.66 +0.2
670,151 + ABZR87_RS03190 0.66 +0.4
670,151 + ABZR87_RS03190 0.66 +0.5
670,151 + ABZR87_RS03190 0.66 -1.2
670,152 - ABZR87_RS03190 0.66 -2.6
670,152 - ABZR87_RS03190 0.66 -0.6
670,152 - ABZR87_RS03190 0.66 +1.1
670,152 - ABZR87_RS03190 0.66 -0.8
670,152 - ABZR87_RS03190 0.66 +0.0
670,152 - ABZR87_RS03190 0.66 +0.4
670,152 - ABZR87_RS03190 0.66 -2.4
670,185 - ABZR87_RS03190 0.69 +1.8
670,261 + ABZR87_RS03190 0.75 +0.6
670,261 + ABZR87_RS03190 0.75 -0.0
670,261 + ABZR87_RS03190 0.75 +0.6
670,261 + ABZR87_RS03190 0.75 +1.4
670,262 - ABZR87_RS03190 0.75 -1.6
670,262 - ABZR87_RS03190 0.75 -0.6
670,319 + ABZR87_RS03190 0.80 +0.7
670,319 + ABZR87_RS03190 0.80 +2.5
670,320 - ABZR87_RS03190 0.80 +1.1
670,320 - ABZR87_RS03190 0.80 -0.5
670,320 - ABZR87_RS03190 0.80 +0.2
670,322 - ABZR87_RS03190 0.80 -0.5
670,322 - ABZR87_RS03190 0.80 -1.6
670,322 - ABZR87_RS03190 0.80 +0.6
670,322 - ABZR87_RS03190 0.80 -1.6
670,399 + ABZR87_RS03190 0.87 -0.7
670,399 + ABZR87_RS03190 0.87 +0.1
670,400 - ABZR87_RS03190 0.87 +1.2
670,704 + ABZR87_RS03195 0.12 +0.6
670,704 + ABZR87_RS03195 0.12 +0.4
670,704 + ABZR87_RS03195 0.12 -0.7
670,704 + ABZR87_RS03195 0.12 +0.4
670,704 + ABZR87_RS03195 0.12 -2.0
670,704 + ABZR87_RS03195 0.12 -1.4
670,704 + ABZR87_RS03195 0.12 -1.1
670,704 + ABZR87_RS03195 0.12 -0.2
670,704 + ABZR87_RS03195 0.12 +1.2
670,704 + ABZR87_RS03195 0.12 -0.4
670,705 - ABZR87_RS03195 0.12 +1.9
670,705 - ABZR87_RS03195 0.12 -0.3
670,705 - ABZR87_RS03195 0.12 -0.1
670,705 - ABZR87_RS03195 0.12 +1.5
670,705 - ABZR87_RS03195 0.12 +0.7
670,705 - ABZR87_RS03195 0.12 +0.3
670,864 + ABZR87_RS03195 0.26 +0.9
670,864 + ABZR87_RS03195 0.26 -0.0
670,864 + ABZR87_RS03195 0.26 -2.3
670,864 + ABZR87_RS03195 0.26 -0.0
670,864 + ABZR87_RS03195 0.26 -0.6
670,864 + ABZR87_RS03195 0.26 +3.6
670,864 + ABZR87_RS03195 0.26 -1.2
670,865 - ABZR87_RS03195 0.26 -1.7
670,865 - ABZR87_RS03195 0.26 -1.1
670,865 - ABZR87_RS03195 0.26 -0.5
670,946 - ABZR87_RS03195 0.33 -0.1
671,166 + ABZR87_RS03195 0.52 +0.7
671,166 + ABZR87_RS03195 0.52 +0.2
671,167 - ABZR87_RS03195 0.52 +0.1
671,167 - ABZR87_RS03195 0.52 -0.6
671,167 - ABZR87_RS03195 0.52 +2.4
671,167 - ABZR87_RS03195 0.52 -0.8
671,289 + ABZR87_RS03195 0.62 -1.9
671,289 + ABZR87_RS03195 0.62 +1.0
671,290 - ABZR87_RS03195 0.63 +0.8
671,290 - ABZR87_RS03195 0.63 +2.3
671,290 - ABZR87_RS03195 0.63 -0.7
671,290 - ABZR87_RS03195 0.63 +0.0
671,290 - ABZR87_RS03195 0.63 +0.4
671,476 - ABZR87_RS03195 0.79 -0.7
671,476 - ABZR87_RS03195 0.79 -1.6
671,476 - ABZR87_RS03195 0.79 +0.1
671,557 + ABZR87_RS03195 0.86 -0.5
671,557 + ABZR87_RS03195 0.86 -2.3
671,557 + ABZR87_RS03195 0.86 +0.1
671,557 + ABZR87_RS03195 0.86 +0.1
671,557 + ABZR87_RS03195 0.86 -1.8
671,557 + ABZR87_RS03195 0.86 +1.6
671,557 + ABZR87_RS03195 0.86 +0.2
671,557 + ABZR87_RS03195 0.86 +0.7
671,558 - ABZR87_RS03195 0.86 +0.3
671,558 - ABZR87_RS03195 0.86 +0.5
671,558 - ABZR87_RS03195 0.86 -0.0
671,558 - ABZR87_RS03195 0.86 +0.7
671,558 - ABZR87_RS03195 0.86 +0.2
671,558 - ABZR87_RS03195 0.86 -2.7
671,558 - ABZR87_RS03195 0.86 -0.6
671,558 - ABZR87_RS03195 0.86 -2.6
671,860 + -0.3
671,860 + -0.5
671,863 + -0.8
671,864 - -0.5
671,936 + +1.7
671,936 + +0.7
671,936 + +0.9
671,936 + +4.0
671,937 - -0.4
671,937 - +0.8
671,937 - +0.8
671,937 - -0.9
672,130 - ABZR87_RS03200 0.26 -0.1
672,130 - ABZR87_RS03200 0.26 -2.5
672,345 + ABZR87_RS03200 0.58 +0.1
672,345 + ABZR87_RS03200 0.58 -0.6
672,346 - ABZR87_RS03200 0.58 -1.6
672,346 - ABZR87_RS03200 0.58 +2.1
672,346 - ABZR87_RS03200 0.58 +0.3
672,346 - ABZR87_RS03200 0.58 -0.0
672,456 + ABZR87_RS03200 0.75 -1.9
672,456 + ABZR87_RS03200 0.75 +1.1
672,456 + ABZR87_RS03200 0.75 -2.9
672,457 - ABZR87_RS03200 0.75 -1.5
672,457 - ABZR87_RS03200 0.75 -1.3
672,457 - ABZR87_RS03200 0.75 -0.2
672,457 - ABZR87_RS03200 0.75 -0.6
672,457 - ABZR87_RS03200 0.75 -1.0
672,457 - ABZR87_RS03200 0.75 +1.1
672,457 - ABZR87_RS03200 0.75 -0.4

Or see this region's nucleotide sequence