Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03085 and ABZR87_RS03090 are separated by 282 nucleotides ABZR87_RS03090 and ABZR87_RS03095 are separated by 29 nucleotides
ABZR87_RS03085: ABZR87_RS03085 - ABC transporter substrate-binding protein, at 649,222 to 650,313
_RS03085
ABZR87_RS03090: ABZR87_RS03090 - helix-turn-helix transcriptional regulator, at 650,596 to 651,393
_RS03090
ABZR87_RS03095: ABZR87_RS03095 - ATP-binding protein, at 651,423 to 652,763
_RS03095
Position (kb) 650
651
652 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 649.646 kb on + strand, within ABZR87_RS03085 at 649.749 kb on + strand, within ABZR87_RS03085 at 649.749 kb on + strand, within ABZR87_RS03085 at 649.790 kb on + strand, within ABZR87_RS03085 at 649.790 kb on + strand, within ABZR87_RS03085 at 649.790 kb on + strand, within ABZR87_RS03085 at 649.790 kb on + strand, within ABZR87_RS03085 at 649.791 kb on - strand, within ABZR87_RS03085 at 649.791 kb on - strand, within ABZR87_RS03085 at 649.850 kb on + strand, within ABZR87_RS03085 at 649.850 kb on + strand, within ABZR87_RS03085 at 649.851 kb on - strand, within ABZR87_RS03085 at 649.851 kb on - strand, within ABZR87_RS03085 at 649.919 kb on + strand, within ABZR87_RS03085 at 649.919 kb on + strand, within ABZR87_RS03085 at 649.920 kb on - strand, within ABZR87_RS03085 at 649.920 kb on - strand, within ABZR87_RS03085 at 649.920 kb on - strand, within ABZR87_RS03085 at 650.179 kb on + strand, within ABZR87_RS03085 at 650.179 kb on + strand, within ABZR87_RS03085 at 650.180 kb on - strand, within ABZR87_RS03085 at 650.180 kb on - strand, within ABZR87_RS03085 at 650.180 kb on - strand, within ABZR87_RS03085 at 650.180 kb on - strand, within ABZR87_RS03085 at 650.180 kb on - strand, within ABZR87_RS03085 at 650.180 kb on - strand, within ABZR87_RS03085 at 650.198 kb on + strand, within ABZR87_RS03085 at 650.198 kb on + strand, within ABZR87_RS03085 at 650.198 kb on + strand, within ABZR87_RS03085 at 650.198 kb on + strand, within ABZR87_RS03085 at 650.198 kb on + strand, within ABZR87_RS03085 at 650.198 kb on - strand, within ABZR87_RS03085 at 650.199 kb on - strand, within ABZR87_RS03085 at 650.298 kb on + strand at 650.298 kb on + strand at 650.298 kb on + strand at 650.298 kb on + strand at 650.298 kb on + strand at 650.299 kb on - strand at 650.299 kb on - strand at 650.481 kb on + strand at 650.481 kb on + strand at 650.481 kb on + strand at 650.482 kb on - strand at 650.482 kb on - strand at 650.482 kb on - strand at 650.482 kb on - strand at 650.482 kb on - strand at 650.562 kb on - strand at 650.562 kb on - strand at 650.562 kb on - strand at 650.668 kb on + strand at 650.668 kb on + strand at 650.668 kb on + strand at 650.668 kb on + strand at 650.668 kb on + strand at 650.669 kb on - strand at 650.669 kb on - strand at 650.734 kb on + strand, within ABZR87_RS03090 at 650.734 kb on + strand, within ABZR87_RS03090 at 650.734 kb on + strand, within ABZR87_RS03090 at 650.734 kb on + strand, within ABZR87_RS03090 at 650.735 kb on - strand, within ABZR87_RS03090 at 650.735 kb on - strand, within ABZR87_RS03090 at 650.735 kb on - strand, within ABZR87_RS03090 at 650.735 kb on - strand, within ABZR87_RS03090 at 650.735 kb on - strand, within ABZR87_RS03090 at 650.735 kb on - strand, within ABZR87_RS03090 at 650.736 kb on + strand, within ABZR87_RS03090 at 650.736 kb on + strand, within ABZR87_RS03090 at 650.737 kb on - strand, within ABZR87_RS03090 at 650.824 kb on + strand, within ABZR87_RS03090 at 650.862 kb on + strand, within ABZR87_RS03090 at 650.862 kb on + strand, within ABZR87_RS03090 at 650.862 kb on + strand, within ABZR87_RS03090 at 650.862 kb on + strand, within ABZR87_RS03090 at 650.863 kb on - strand, within ABZR87_RS03090 at 650.863 kb on - strand, within ABZR87_RS03090 at 650.863 kb on - strand, within ABZR87_RS03090 at 650.863 kb on - strand, within ABZR87_RS03090 at 650.869 kb on + strand, within ABZR87_RS03090 at 650.869 kb on + strand, within ABZR87_RS03090 at 650.869 kb on + strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 651.298 kb on + strand, within ABZR87_RS03090 at 651.298 kb on + strand, within ABZR87_RS03090 at 651.299 kb on - strand, within ABZR87_RS03090 at 651.299 kb on - strand, within ABZR87_RS03090 at 651.299 kb on - strand, within ABZR87_RS03090 at 651.299 kb on - strand, within ABZR87_RS03090 at 651.400 kb on + strand at 651.400 kb on + strand at 651.401 kb on - strand at 651.424 kb on + strand at 651.425 kb on - strand at 651.524 kb on - strand at 651.704 kb on + strand, within ABZR87_RS03095 at 651.704 kb on + strand, within ABZR87_RS03095 at 651.705 kb on - strand, within ABZR87_RS03095 at 651.705 kb on - strand, within ABZR87_RS03095 at 651.715 kb on + strand, within ABZR87_RS03095 at 651.716 kb on - strand, within ABZR87_RS03095 at 652.195 kb on + strand, within ABZR87_RS03095 at 652.195 kb on + strand, within ABZR87_RS03095 at 652.196 kb on - strand, within ABZR87_RS03095 at 652.196 kb on - strand, within ABZR87_RS03095 at 652.196 kb on - strand, within ABZR87_RS03095 at 652.196 kb on - strand, within ABZR87_RS03095 at 652.345 kb on + strand, within ABZR87_RS03095 at 652.345 kb on + strand, within ABZR87_RS03095 at 652.345 kb on + strand, within ABZR87_RS03095 at 652.345 kb on + strand, within ABZR87_RS03095 at 652.346 kb on - strand, within ABZR87_RS03095 at 652.346 kb on - strand, within ABZR87_RS03095 at 652.369 kb on + strand, within ABZR87_RS03095 at 652.369 kb on + strand, within ABZR87_RS03095 at 652.370 kb on - strand, within ABZR87_RS03095 at 652.370 kb on - strand, within ABZR87_RS03095 at 652.376 kb on + strand, within ABZR87_RS03095 at 652.377 kb on - strand, within ABZR87_RS03095 at 652.387 kb on + strand, within ABZR87_RS03095 at 652.387 kb on + strand, within ABZR87_RS03095 at 652.387 kb on + strand, within ABZR87_RS03095 at 652.387 kb on + strand, within ABZR87_RS03095 at 652.388 kb on - strand, within ABZR87_RS03095 at 652.388 kb on - strand, within ABZR87_RS03095 at 652.388 kb on - strand, within ABZR87_RS03095 at 652.388 kb on - strand, within ABZR87_RS03095 at 652.388 kb on - strand, within ABZR87_RS03095
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 649,646 + ABZR87_RS03085 0.39 -0.7 649,749 + ABZR87_RS03085 0.48 +0.3 649,749 + ABZR87_RS03085 0.48 -0.2 649,790 + ABZR87_RS03085 0.52 -1.9 649,790 + ABZR87_RS03085 0.52 -0.4 649,790 + ABZR87_RS03085 0.52 -0.9 649,790 + ABZR87_RS03085 0.52 -0.9 649,791 - ABZR87_RS03085 0.52 -0.7 649,791 - ABZR87_RS03085 0.52 -0.5 649,850 + ABZR87_RS03085 0.58 +1.2 649,850 + ABZR87_RS03085 0.58 -0.8 649,851 - ABZR87_RS03085 0.58 +0.2 649,851 - ABZR87_RS03085 0.58 +0.1 649,919 + ABZR87_RS03085 0.64 -0.2 649,919 + ABZR87_RS03085 0.64 +0.4 649,920 - ABZR87_RS03085 0.64 -2.6 649,920 - ABZR87_RS03085 0.64 -0.2 649,920 - ABZR87_RS03085 0.64 -0.4 650,179 + ABZR87_RS03085 0.88 +1.4 650,179 + ABZR87_RS03085 0.88 +0.2 650,180 - ABZR87_RS03085 0.88 +0.3 650,180 - ABZR87_RS03085 0.88 -0.6 650,180 - ABZR87_RS03085 0.88 +1.5 650,180 - ABZR87_RS03085 0.88 -0.9 650,180 - ABZR87_RS03085 0.88 +0.4 650,180 - ABZR87_RS03085 0.88 +1.1 650,198 + ABZR87_RS03085 0.89 +0.1 650,198 + ABZR87_RS03085 0.89 -1.0 650,198 + ABZR87_RS03085 0.89 +1.5 650,198 + ABZR87_RS03085 0.89 +0.9 650,198 + ABZR87_RS03085 0.89 +0.6 650,198 - ABZR87_RS03085 0.89 +0.2 650,199 - ABZR87_RS03085 0.89 +0.5 650,298 + +0.9 650,298 + -1.1 650,298 + -0.0 650,298 + +1.4 650,298 + +0.1 650,299 - -0.2 650,299 - +0.3 650,481 + -1.3 650,481 + -1.0 650,481 + +1.1 650,482 - -0.1 650,482 - -0.9 650,482 - -0.3 650,482 - -0.0 650,482 - +0.6 650,562 - +1.5 650,562 - -0.7 650,562 - +0.5 650,668 + -0.3 650,668 + -1.0 650,668 + -0.6 650,668 + -0.7 650,668 + +0.4 650,669 - +0.6 650,669 - -0.5 650,734 + ABZR87_RS03090 0.17 -0.2 650,734 + ABZR87_RS03090 0.17 -0.1 650,734 + ABZR87_RS03090 0.17 +2.1 650,734 + ABZR87_RS03090 0.17 +0.4 650,735 - ABZR87_RS03090 0.17 +0.4 650,735 - ABZR87_RS03090 0.17 +0.1 650,735 - ABZR87_RS03090 0.17 +1.4 650,735 - ABZR87_RS03090 0.17 +0.5 650,735 - ABZR87_RS03090 0.17 +0.1 650,735 - ABZR87_RS03090 0.17 -0.3 650,736 + ABZR87_RS03090 0.18 -1.6 650,736 + ABZR87_RS03090 0.18 -0.5 650,737 - ABZR87_RS03090 0.18 -0.1 650,824 + ABZR87_RS03090 0.29 +0.3 650,862 + ABZR87_RS03090 0.33 +0.7 650,862 + ABZR87_RS03090 0.33 +0.6 650,862 + ABZR87_RS03090 0.33 +3.5 650,862 + ABZR87_RS03090 0.33 -0.3 650,863 - ABZR87_RS03090 0.33 +1.0 650,863 - ABZR87_RS03090 0.33 +0.7 650,863 - ABZR87_RS03090 0.33 -0.2 650,863 - ABZR87_RS03090 0.33 +0.5 650,869 + ABZR87_RS03090 0.34 -0.0 650,869 + ABZR87_RS03090 0.34 -1.6 650,869 + ABZR87_RS03090 0.34 +0.4 650,870 - ABZR87_RS03090 0.34 +0.3 650,870 - ABZR87_RS03090 0.34 +0.5 650,870 - ABZR87_RS03090 0.34 -1.5 650,870 - ABZR87_RS03090 0.34 -0.4 650,870 - ABZR87_RS03090 0.34 +0.3 650,870 - ABZR87_RS03090 0.34 +0.7 650,870 - ABZR87_RS03090 0.34 -1.0 650,870 - ABZR87_RS03090 0.34 +1.1 650,870 - ABZR87_RS03090 0.34 -0.9 650,870 - ABZR87_RS03090 0.34 +5.2 650,870 - ABZR87_RS03090 0.34 +2.6 651,298 + ABZR87_RS03090 0.88 +0.6 651,298 + ABZR87_RS03090 0.88 -0.3 651,299 - ABZR87_RS03090 0.88 +1.2 651,299 - ABZR87_RS03090 0.88 -2.0 651,299 - ABZR87_RS03090 0.88 +0.7 651,299 - ABZR87_RS03090 0.88 -2.5 651,400 + -0.7 651,400 + -3.0 651,401 - -2.0 651,424 + +1.5 651,425 - +0.9 651,524 - -0.0 651,704 + ABZR87_RS03095 0.21 +0.6 651,704 + ABZR87_RS03095 0.21 +1.1 651,705 - ABZR87_RS03095 0.21 -0.4 651,705 - ABZR87_RS03095 0.21 -0.2 651,715 + ABZR87_RS03095 0.22 +1.3 651,716 - ABZR87_RS03095 0.22 -0.2 652,195 + ABZR87_RS03095 0.58 -1.8 652,195 + ABZR87_RS03095 0.58 -0.5 652,196 - ABZR87_RS03095 0.58 -0.1 652,196 - ABZR87_RS03095 0.58 -0.5 652,196 - ABZR87_RS03095 0.58 -1.8 652,196 - ABZR87_RS03095 0.58 -0.1 652,345 + ABZR87_RS03095 0.69 +0.2 652,345 + ABZR87_RS03095 0.69 +0.0 652,345 + ABZR87_RS03095 0.69 +0.1 652,345 + ABZR87_RS03095 0.69 +0.9 652,346 - ABZR87_RS03095 0.69 +3.6 652,346 - ABZR87_RS03095 0.69 +0.7 652,369 + ABZR87_RS03095 0.71 +0.4 652,369 + ABZR87_RS03095 0.71 -1.3 652,370 - ABZR87_RS03095 0.71 -1.5 652,370 - ABZR87_RS03095 0.71 -1.2 652,376 + ABZR87_RS03095 0.71 -0.9 652,377 - ABZR87_RS03095 0.71 +1.7 652,387 + ABZR87_RS03095 0.72 -0.1 652,387 + ABZR87_RS03095 0.72 -0.1 652,387 + ABZR87_RS03095 0.72 -0.3 652,387 + ABZR87_RS03095 0.72 -0.0 652,388 - ABZR87_RS03095 0.72 -1.4 652,388 - ABZR87_RS03095 0.72 +0.8 652,388 - ABZR87_RS03095 0.72 +0.1 652,388 - ABZR87_RS03095 0.72 +0.4 652,388 - ABZR87_RS03095 0.72 +1.1
Or see this region's nucleotide sequence