Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02895

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02885 and ABZR87_RS02890 are separated by 20 nucleotidesABZR87_RS02890 and ABZR87_RS02895 are separated by 10 nucleotidesABZR87_RS02895 and ABZR87_RS02900 are separated by 8 nucleotides ABZR87_RS02885: ABZR87_RS02885 - class I SAM-dependent methyltransferase, at 599,299 to 599,889 _RS02885 ABZR87_RS02890: ABZR87_RS02890 - DUF2135 domain-containing protein, at 599,910 to 600,752 _RS02890 ABZR87_RS02895: ABZR87_RS02895 - YfaP family protein, at 600,763 to 601,554 _RS02895 ABZR87_RS02900: ABZR87_RS02900 - DUF2300 domain-containing protein, at 601,563 to 603,293 _RS02900 Position (kb) 600 601 602Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 599.802 kb on - strand, within ABZR87_RS02885at 599.802 kb on - strand, within ABZR87_RS02885at 599.802 kb on - strand, within ABZR87_RS02885at 599.802 kb on - strand, within ABZR87_RS02885at 599.911 kb on + strandat 599.911 kb on + strandat 599.911 kb on + strandat 599.911 kb on + strandat 599.912 kb on - strandat 599.931 kb on + strandat 600.061 kb on + strand, within ABZR87_RS02890at 600.062 kb on - strand, within ABZR87_RS02890at 600.062 kb on - strand, within ABZR87_RS02890at 600.064 kb on + strand, within ABZR87_RS02890at 600.064 kb on + strand, within ABZR87_RS02890at 600.064 kb on + strand, within ABZR87_RS02890at 600.064 kb on + strand, within ABZR87_RS02890at 600.064 kb on + strand, within ABZR87_RS02890at 600.065 kb on - strand, within ABZR87_RS02890at 600.065 kb on - strand, within ABZR87_RS02890at 600.065 kb on - strand, within ABZR87_RS02890at 600.065 kb on - strand, within ABZR87_RS02890at 600.065 kb on - strand, within ABZR87_RS02890at 600.065 kb on - strand, within ABZR87_RS02890at 600.065 kb on - strand, within ABZR87_RS02890at 600.065 kb on - strand, within ABZR87_RS02890at 600.073 kb on + strand, within ABZR87_RS02890at 600.073 kb on + strand, within ABZR87_RS02890at 600.074 kb on - strand, within ABZR87_RS02890at 600.074 kb on - strand, within ABZR87_RS02890at 600.074 kb on - strand, within ABZR87_RS02890at 600.074 kb on - strand, within ABZR87_RS02890at 600.083 kb on - strand, within ABZR87_RS02890at 600.083 kb on - strand, within ABZR87_RS02890at 600.083 kb on - strand, within ABZR87_RS02890at 600.083 kb on - strand, within ABZR87_RS02890at 600.083 kb on - strand, within ABZR87_RS02890at 600.083 kb on - strand, within ABZR87_RS02890at 600.083 kb on - strand, within ABZR87_RS02890at 600.112 kb on + strand, within ABZR87_RS02890at 600.112 kb on + strand, within ABZR87_RS02890at 600.112 kb on + strand, within ABZR87_RS02890at 600.112 kb on + strand, within ABZR87_RS02890at 600.112 kb on + strand, within ABZR87_RS02890at 600.113 kb on - strand, within ABZR87_RS02890at 600.113 kb on - strand, within ABZR87_RS02890at 600.184 kb on + strand, within ABZR87_RS02890at 600.185 kb on - strand, within ABZR87_RS02890at 600.289 kb on + strand, within ABZR87_RS02890at 600.289 kb on + strand, within ABZR87_RS02890at 600.290 kb on - strand, within ABZR87_RS02890at 600.290 kb on - strand, within ABZR87_RS02890at 600.298 kb on + strand, within ABZR87_RS02890at 600.298 kb on + strand, within ABZR87_RS02890at 600.299 kb on - strand, within ABZR87_RS02890at 600.299 kb on - strand, within ABZR87_RS02890at 600.371 kb on - strand, within ABZR87_RS02890at 600.371 kb on - strand, within ABZR87_RS02890at 600.438 kb on - strand, within ABZR87_RS02890at 600.583 kb on + strand, within ABZR87_RS02890at 600.601 kb on + strand, within ABZR87_RS02890at 600.855 kb on + strand, within ABZR87_RS02895at 600.857 kb on + strand, within ABZR87_RS02895at 600.858 kb on - strand, within ABZR87_RS02895at 600.858 kb on - strand, within ABZR87_RS02895at 600.858 kb on - strand, within ABZR87_RS02895at 600.858 kb on - strand, within ABZR87_RS02895at 600.858 kb on - strand, within ABZR87_RS02895at 600.944 kb on + strand, within ABZR87_RS02895at 600.944 kb on + strand, within ABZR87_RS02895at 600.945 kb on - strand, within ABZR87_RS02895at 600.953 kb on + strand, within ABZR87_RS02895at 600.953 kb on + strand, within ABZR87_RS02895at 600.954 kb on - strand, within ABZR87_RS02895at 600.954 kb on - strand, within ABZR87_RS02895at 600.954 kb on - strand, within ABZR87_RS02895at 600.954 kb on - strand, within ABZR87_RS02895at 601.178 kb on + strand, within ABZR87_RS02895at 601.178 kb on + strand, within ABZR87_RS02895at 601.179 kb on - strand, within ABZR87_RS02895at 601.179 kb on - strand, within ABZR87_RS02895at 601.179 kb on - strand, within ABZR87_RS02895at 601.286 kb on + strand, within ABZR87_RS02895at 601.287 kb on - strand, within ABZR87_RS02895at 601.287 kb on - strand, within ABZR87_RS02895at 601.287 kb on - strand, within ABZR87_RS02895at 601.287 kb on - strand, within ABZR87_RS02895at 601.287 kb on - strand, within ABZR87_RS02895at 601.424 kb on + strand, within ABZR87_RS02895at 601.424 kb on + strand, within ABZR87_RS02895at 601.424 kb on + strand, within ABZR87_RS02895at 601.425 kb on - strand, within ABZR87_RS02895at 601.425 kb on - strand, within ABZR87_RS02895at 601.425 kb on - strand, within ABZR87_RS02895at 601.425 kb on - strand, within ABZR87_RS02895at 601.425 kb on - strand, within ABZR87_RS02895at 601.660 kb on + strandat 601.660 kb on + strandat 601.661 kb on - strandat 601.661 kb on - strandat 601.711 kb on + strandat 601.711 kb on + strandat 601.711 kb on + strandat 601.712 kb on - strandat 601.712 kb on - strandat 601.790 kb on - strand, within ABZR87_RS02900at 601.790 kb on - strand, within ABZR87_RS02900at 602.005 kb on - strand, within ABZR87_RS02900at 602.134 kb on + strand, within ABZR87_RS02900at 602.171 kb on - strand, within ABZR87_RS02900at 602.171 kb on - strand, within ABZR87_RS02900at 602.171 kb on - strand, within ABZR87_RS02900at 602.251 kb on + strand, within ABZR87_RS02900at 602.251 kb on + strand, within ABZR87_RS02900at 602.252 kb on - strand, within ABZR87_RS02900at 602.252 kb on - strand, within ABZR87_RS02900at 602.252 kb on - strand, within ABZR87_RS02900at 602.431 kb on + strand, within ABZR87_RS02900

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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599,802 - ABZR87_RS02885 0.85 +0.6
599,802 - ABZR87_RS02885 0.85 +0.9
599,802 - ABZR87_RS02885 0.85 +0.9
599,802 - ABZR87_RS02885 0.85 -0.8
599,911 + -0.4
599,911 + +0.1
599,911 + +2.5
599,911 + +0.5
599,912 - +0.2
599,931 + +1.0
600,061 + ABZR87_RS02890 0.18 +0.3
600,062 - ABZR87_RS02890 0.18 -1.0
600,062 - ABZR87_RS02890 0.18 +1.1
600,064 + ABZR87_RS02890 0.18 -0.8
600,064 + ABZR87_RS02890 0.18 -0.9
600,064 + ABZR87_RS02890 0.18 -2.8
600,064 + ABZR87_RS02890 0.18 -2.0
600,064 + ABZR87_RS02890 0.18 +2.8
600,065 - ABZR87_RS02890 0.18 -0.1
600,065 - ABZR87_RS02890 0.18 +1.0
600,065 - ABZR87_RS02890 0.18 -2.0
600,065 - ABZR87_RS02890 0.18 -0.8
600,065 - ABZR87_RS02890 0.18 +0.3
600,065 - ABZR87_RS02890 0.18 +0.1
600,065 - ABZR87_RS02890 0.18 -0.6
600,065 - ABZR87_RS02890 0.18 +1.2
600,073 + ABZR87_RS02890 0.19 +1.1
600,073 + ABZR87_RS02890 0.19 -0.6
600,074 - ABZR87_RS02890 0.19 +0.2
600,074 - ABZR87_RS02890 0.19 -1.0
600,074 - ABZR87_RS02890 0.19 +1.1
600,074 - ABZR87_RS02890 0.19 -1.6
600,083 - ABZR87_RS02890 0.21 -0.2
600,083 - ABZR87_RS02890 0.21 -1.5
600,083 - ABZR87_RS02890 0.21 +0.8
600,083 - ABZR87_RS02890 0.21 -1.1
600,083 - ABZR87_RS02890 0.21 +0.0
600,083 - ABZR87_RS02890 0.21 -1.0
600,083 - ABZR87_RS02890 0.21 -0.3
600,112 + ABZR87_RS02890 0.24 +0.5
600,112 + ABZR87_RS02890 0.24 +0.9
600,112 + ABZR87_RS02890 0.24 +0.1
600,112 + ABZR87_RS02890 0.24 -0.1
600,112 + ABZR87_RS02890 0.24 -0.0
600,113 - ABZR87_RS02890 0.24 +0.2
600,113 - ABZR87_RS02890 0.24 +1.0
600,184 + ABZR87_RS02890 0.33 -0.3
600,185 - ABZR87_RS02890 0.33 -0.6
600,289 + ABZR87_RS02890 0.45 +1.5
600,289 + ABZR87_RS02890 0.45 -0.4
600,290 - ABZR87_RS02890 0.45 -1.9
600,290 - ABZR87_RS02890 0.45 +0.2
600,298 + ABZR87_RS02890 0.46 -0.3
600,298 + ABZR87_RS02890 0.46 -0.4
600,299 - ABZR87_RS02890 0.46 +2.5
600,299 - ABZR87_RS02890 0.46 +1.4
600,371 - ABZR87_RS02890 0.55 +0.9
600,371 - ABZR87_RS02890 0.55 -1.1
600,438 - ABZR87_RS02890 0.63 -0.4
600,583 + ABZR87_RS02890 0.80 +0.9
600,601 + ABZR87_RS02890 0.82 +1.0
600,855 + ABZR87_RS02895 0.12 +2.1
600,857 + ABZR87_RS02895 0.12 -1.3
600,858 - ABZR87_RS02895 0.12 -0.4
600,858 - ABZR87_RS02895 0.12 -1.0
600,858 - ABZR87_RS02895 0.12 -1.5
600,858 - ABZR87_RS02895 0.12 +1.5
600,858 - ABZR87_RS02895 0.12 +2.9
600,944 + ABZR87_RS02895 0.23 +0.1
600,944 + ABZR87_RS02895 0.23 +0.0
600,945 - ABZR87_RS02895 0.23 +0.2
600,953 + ABZR87_RS02895 0.24 -1.8
600,953 + ABZR87_RS02895 0.24 +0.8
600,954 - ABZR87_RS02895 0.24 +0.3
600,954 - ABZR87_RS02895 0.24 -0.8
600,954 - ABZR87_RS02895 0.24 +0.3
600,954 - ABZR87_RS02895 0.24 -0.6
601,178 + ABZR87_RS02895 0.52 +0.7
601,178 + ABZR87_RS02895 0.52 -0.1
601,179 - ABZR87_RS02895 0.53 +0.5
601,179 - ABZR87_RS02895 0.53 +1.1
601,179 - ABZR87_RS02895 0.53 +1.1
601,286 + ABZR87_RS02895 0.66 -0.0
601,287 - ABZR87_RS02895 0.66 +0.5
601,287 - ABZR87_RS02895 0.66 +3.6
601,287 - ABZR87_RS02895 0.66 -0.9
601,287 - ABZR87_RS02895 0.66 +0.5
601,287 - ABZR87_RS02895 0.66 +1.0
601,424 + ABZR87_RS02895 0.83 -0.3
601,424 + ABZR87_RS02895 0.83 +0.9
601,424 + ABZR87_RS02895 0.83 +1.0
601,425 - ABZR87_RS02895 0.84 +0.0
601,425 - ABZR87_RS02895 0.84 +0.1
601,425 - ABZR87_RS02895 0.84 -1.3
601,425 - ABZR87_RS02895 0.84 -0.1
601,425 - ABZR87_RS02895 0.84 +0.3
601,660 + +1.0
601,660 + +1.0
601,661 - -0.3
601,661 - +0.3
601,711 + +1.5
601,711 + -0.2
601,711 + -0.4
601,712 - -1.0
601,712 - -1.1
601,790 - ABZR87_RS02900 0.13 +1.1
601,790 - ABZR87_RS02900 0.13 -1.0
602,005 - ABZR87_RS02900 0.26 -1.3
602,134 + ABZR87_RS02900 0.33 +0.3
602,171 - ABZR87_RS02900 0.35 +0.5
602,171 - ABZR87_RS02900 0.35 -0.1
602,171 - ABZR87_RS02900 0.35 +0.7
602,251 + ABZR87_RS02900 0.40 -1.1
602,251 + ABZR87_RS02900 0.40 +0.2
602,252 - ABZR87_RS02900 0.40 -1.8
602,252 - ABZR87_RS02900 0.40 -0.9
602,252 - ABZR87_RS02900 0.40 +3.2
602,431 + ABZR87_RS02900 0.50 -0.6

Or see this region's nucleotide sequence