Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02855 and ABZR87_RS02860 are separated by 114 nucleotides ABZR87_RS02860 and ABZR87_RS02865 are separated by 186 nucleotides ABZR87_RS02865 and ABZR87_RS02870 are separated by 297 nucleotides
ABZR87_RS02855: ABZR87_RS02855 - elongation factor G, at 591,430 to 593,556
_RS02855
ABZR87_RS02860: ABZR87_RS02860 - 30S ribosomal protein S7, at 593,671 to 594,141
_RS02860
ABZR87_RS02865: ABZR87_RS02865 - 30S ribosomal protein S12, at 594,328 to 594,705
_RS02865
ABZR87_RS02870: ABZR87_RS02870 - MFS transporter, at 595,003 to 596,256
_RS02870
Position (kb) 594
595 Strain fitness (log2 ratio) -2
-1
0
1
2 at 595.055 kb on - strand at 595.102 kb on + strand at 595.102 kb on + strand at 595.184 kb on + strand, within ABZR87_RS02870 at 595.185 kb on - strand, within ABZR87_RS02870 at 595.185 kb on - strand, within ABZR87_RS02870 at 595.185 kb on - strand, within ABZR87_RS02870 at 595.235 kb on + strand, within ABZR87_RS02870 at 595.235 kb on + strand, within ABZR87_RS02870 at 595.236 kb on - strand, within ABZR87_RS02870 at 595.236 kb on - strand, within ABZR87_RS02870 at 595.236 kb on - strand, within ABZR87_RS02870 at 595.236 kb on - strand, within ABZR87_RS02870 at 595.594 kb on + strand, within ABZR87_RS02870 at 595.594 kb on + strand, within ABZR87_RS02870 at 595.595 kb on - strand, within ABZR87_RS02870 at 595.622 kb on + strand, within ABZR87_RS02870 at 595.622 kb on + strand, within ABZR87_RS02870 at 595.623 kb on - strand, within ABZR87_RS02870 at 595.623 kb on - strand, within ABZR87_RS02870 at 595.643 kb on + strand, within ABZR87_RS02870
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 595,055 - -0.1 595,102 + -1.1 595,102 + +2.5 595,184 + ABZR87_RS02870 0.14 -2.2 595,185 - ABZR87_RS02870 0.15 -1.7 595,185 - ABZR87_RS02870 0.15 -1.3 595,185 - ABZR87_RS02870 0.15 +0.0 595,235 + ABZR87_RS02870 0.19 -0.1 595,235 + ABZR87_RS02870 0.19 +0.7 595,236 - ABZR87_RS02870 0.19 -0.2 595,236 - ABZR87_RS02870 0.19 +2.1 595,236 - ABZR87_RS02870 0.19 +0.4 595,236 - ABZR87_RS02870 0.19 -0.0 595,594 + ABZR87_RS02870 0.47 +1.0 595,594 + ABZR87_RS02870 0.47 -0.4 595,595 - ABZR87_RS02870 0.47 +0.5 595,622 + ABZR87_RS02870 0.49 -1.6 595,622 + ABZR87_RS02870 0.49 -0.5 595,623 - ABZR87_RS02870 0.49 -0.1 595,623 - ABZR87_RS02870 0.49 +0.2 595,643 + ABZR87_RS02870 0.51 -0.2
Or see this region's nucleotide sequence