Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02450 and ABZR87_RS02455 are separated by 62 nucleotides ABZR87_RS02455 and ABZR87_RS02460 are separated by 31 nucleotides ABZR87_RS02460 and ABZR87_RS02465 overlap by 8 nucleotides ABZR87_RS02465 and ABZR87_RS02470 overlap by 4 nucleotides ABZR87_RS02470 and ABZR87_RS02475 are separated by 47 nucleotides
ABZR87_RS02450: ABZR87_RS02450 - Sec-independent protein translocase subunit TatA, at 523,676 to 523,924
_RS02450
ABZR87_RS02455: ABZR87_RS02455 - membrane protein, at 523,987 to 524,361
_RS02455
ABZR87_RS02460: ABZR87_RS02460 - phosphoribosyl-ATP diphosphatase, at 524,393 to 524,767
_RS02460
ABZR87_RS02465: ABZR87_RS02465 - phosphoribosyl-AMP cyclohydrolase, at 524,760 to 525,182
_RS02465
ABZR87_RS02470: ABZR87_RS02470 - imidazole glycerol phosphate synthase subunit HisF, at 525,179 to 525,955
_RS02470
ABZR87_RS02475: ABZR87_RS02475 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 526,003 to 526,746
_RS02475
Position (kb) 524
525
526 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 523.913 kb on - strand at 523.929 kb on + strand at 523.930 kb on - strand at 523.930 kb on - strand at 523.930 kb on - strand at 523.930 kb on - strand at 523.930 kb on - strand at 523.930 kb on - strand at 523.939 kb on + strand at 523.939 kb on + strand at 523.940 kb on - strand at 523.940 kb on - strand at 523.943 kb on + strand at 523.943 kb on + strand at 523.944 kb on - strand at 524.000 kb on + strand at 524.001 kb on - strand at 524.001 kb on - strand at 524.001 kb on - strand at 524.001 kb on - strand at 524.001 kb on - strand at 524.024 kb on + strand at 524.025 kb on - strand, within ABZR87_RS02455 at 524.043 kb on + strand, within ABZR87_RS02455 at 524.043 kb on + strand, within ABZR87_RS02455 at 524.044 kb on - strand, within ABZR87_RS02455 at 524.044 kb on - strand, within ABZR87_RS02455 at 524.044 kb on - strand, within ABZR87_RS02455 at 524.044 kb on - strand, within ABZR87_RS02455 at 524.048 kb on + strand, within ABZR87_RS02455 at 524.048 kb on + strand, within ABZR87_RS02455 at 524.048 kb on + strand, within ABZR87_RS02455 at 524.048 kb on + strand, within ABZR87_RS02455 at 524.049 kb on - strand, within ABZR87_RS02455 at 524.134 kb on + strand, within ABZR87_RS02455 at 524.134 kb on + strand, within ABZR87_RS02455 at 524.134 kb on + strand, within ABZR87_RS02455 at 524.134 kb on + strand, within ABZR87_RS02455 at 524.134 kb on + strand, within ABZR87_RS02455 at 524.134 kb on + strand, within ABZR87_RS02455 at 524.134 kb on + strand, within ABZR87_RS02455 at 524.134 kb on + strand, within ABZR87_RS02455 at 524.134 kb on + strand, within ABZR87_RS02455 at 524.135 kb on - strand, within ABZR87_RS02455 at 524.135 kb on - strand, within ABZR87_RS02455 at 524.135 kb on - strand, within ABZR87_RS02455 at 524.135 kb on - strand, within ABZR87_RS02455 at 524.135 kb on - strand, within ABZR87_RS02455 at 524.135 kb on - strand, within ABZR87_RS02455 at 524.135 kb on - strand, within ABZR87_RS02455 at 524.135 kb on - strand, within ABZR87_RS02455 at 524.135 kb on - strand, within ABZR87_RS02455 at 524.180 kb on + strand, within ABZR87_RS02455 at 524.180 kb on + strand, within ABZR87_RS02455 at 524.180 kb on + strand, within ABZR87_RS02455 at 524.180 kb on + strand, within ABZR87_RS02455 at 524.181 kb on - strand, within ABZR87_RS02455 at 524.181 kb on - strand, within ABZR87_RS02455 at 524.181 kb on - strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.209 kb on - strand, within ABZR87_RS02455 at 524.209 kb on - strand, within ABZR87_RS02455 at 524.209 kb on - strand, within ABZR87_RS02455 at 524.209 kb on - strand, within ABZR87_RS02455 at 524.214 kb on - strand, within ABZR87_RS02455 at 524.214 kb on - strand, within ABZR87_RS02455 at 524.214 kb on - strand, within ABZR87_RS02455 at 524.244 kb on + strand, within ABZR87_RS02455 at 524.244 kb on + strand, within ABZR87_RS02455 at 524.279 kb on + strand, within ABZR87_RS02455 at 524.279 kb on + strand, within ABZR87_RS02455 at 524.280 kb on - strand, within ABZR87_RS02455 at 524.280 kb on - strand, within ABZR87_RS02455 at 524.286 kb on + strand, within ABZR87_RS02455 at 524.286 kb on + strand, within ABZR87_RS02455 at 524.287 kb on - strand, within ABZR87_RS02455 at 524.287 kb on - strand, within ABZR87_RS02455 at 524.351 kb on + strand at 524.351 kb on + strand at 524.351 kb on + strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.791 kb on + strand at 524.791 kb on + strand at 524.792 kb on - strand at 524.792 kb on - strand at 524.792 kb on - strand at 524.792 kb on - strand at 524.792 kb on - strand at 524.792 kb on - strand at 524.792 kb on - strand at 525.182 kb on + strand at 525.183 kb on - strand at 525.195 kb on - strand at 525.950 kb on + strand at 525.950 kb on + strand at 525.950 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 523,913 - -0.6 523,929 + -2.4 523,930 - +0.6 523,930 - -2.1 523,930 - -1.3 523,930 - -3.0 523,930 - -0.9 523,930 - +0.1 523,939 + +1.8 523,939 + -2.9 523,940 - +0.6 523,940 - -1.3 523,943 + -1.9 523,943 + +0.7 523,944 - +0.4 524,000 + -1.2 524,001 - -2.6 524,001 - -0.8 524,001 - -0.7 524,001 - -1.7 524,001 - +1.5 524,024 + -1.8 524,025 - ABZR87_RS02455 0.10 +0.2 524,043 + ABZR87_RS02455 0.15 -1.1 524,043 + ABZR87_RS02455 0.15 -2.0 524,044 - ABZR87_RS02455 0.15 +0.6 524,044 - ABZR87_RS02455 0.15 +0.3 524,044 - ABZR87_RS02455 0.15 -0.2 524,044 - ABZR87_RS02455 0.15 -1.5 524,048 + ABZR87_RS02455 0.16 -0.5 524,048 + ABZR87_RS02455 0.16 -2.8 524,048 + ABZR87_RS02455 0.16 -1.9 524,048 + ABZR87_RS02455 0.16 -1.5 524,049 - ABZR87_RS02455 0.17 +1.3 524,134 + ABZR87_RS02455 0.39 +0.5 524,134 + ABZR87_RS02455 0.39 +1.2 524,134 + ABZR87_RS02455 0.39 -0.5 524,134 + ABZR87_RS02455 0.39 +1.6 524,134 + ABZR87_RS02455 0.39 -1.5 524,134 + ABZR87_RS02455 0.39 -2.6 524,134 + ABZR87_RS02455 0.39 -0.9 524,134 + ABZR87_RS02455 0.39 -1.2 524,134 + ABZR87_RS02455 0.39 +0.1 524,135 - ABZR87_RS02455 0.39 -0.7 524,135 - ABZR87_RS02455 0.39 +0.2 524,135 - ABZR87_RS02455 0.39 +0.6 524,135 - ABZR87_RS02455 0.39 -0.6 524,135 - ABZR87_RS02455 0.39 +0.2 524,135 - ABZR87_RS02455 0.39 +1.1 524,135 - ABZR87_RS02455 0.39 +3.3 524,135 - ABZR87_RS02455 0.39 +0.3 524,135 - ABZR87_RS02455 0.39 -0.2 524,180 + ABZR87_RS02455 0.51 -0.6 524,180 + ABZR87_RS02455 0.51 -1.6 524,180 + ABZR87_RS02455 0.51 +0.6 524,180 + ABZR87_RS02455 0.51 +0.2 524,181 - ABZR87_RS02455 0.52 -1.3 524,181 - ABZR87_RS02455 0.52 -0.7 524,181 - ABZR87_RS02455 0.52 -0.0 524,208 + ABZR87_RS02455 0.59 +0.2 524,208 + ABZR87_RS02455 0.59 -0.3 524,208 + ABZR87_RS02455 0.59 -0.3 524,208 + ABZR87_RS02455 0.59 +1.5 524,208 + ABZR87_RS02455 0.59 -0.9 524,208 + ABZR87_RS02455 0.59 -0.3 524,208 + ABZR87_RS02455 0.59 -2.1 524,208 + ABZR87_RS02455 0.59 -0.6 524,208 + ABZR87_RS02455 0.59 +2.1 524,209 - ABZR87_RS02455 0.59 -1.5 524,209 - ABZR87_RS02455 0.59 +0.1 524,209 - ABZR87_RS02455 0.59 -0.1 524,209 - ABZR87_RS02455 0.59 -0.5 524,214 - ABZR87_RS02455 0.61 -0.2 524,214 - ABZR87_RS02455 0.61 +0.9 524,214 - ABZR87_RS02455 0.61 +0.5 524,244 + ABZR87_RS02455 0.69 +0.9 524,244 + ABZR87_RS02455 0.69 -2.3 524,279 + ABZR87_RS02455 0.78 -1.6 524,279 + ABZR87_RS02455 0.78 -0.7 524,280 - ABZR87_RS02455 0.78 -0.0 524,280 - ABZR87_RS02455 0.78 +0.2 524,286 + ABZR87_RS02455 0.80 -2.0 524,286 + ABZR87_RS02455 0.80 +0.1 524,287 - ABZR87_RS02455 0.80 -0.5 524,287 - ABZR87_RS02455 0.80 -2.1 524,351 + +0.3 524,351 + -1.2 524,351 + +0.5 524,352 - -1.0 524,352 - +3.6 524,352 - -0.9 524,352 - -1.1 524,352 - +0.2 524,352 - +0.2 524,352 - +1.1 524,352 - +0.5 524,791 + +0.7 524,791 + +1.5 524,792 - -0.7 524,792 - +1.4 524,792 - +0.9 524,792 - +0.9 524,792 - +1.6 524,792 - +0.6 524,792 - -0.9 525,182 + +2.1 525,183 - -0.6 525,195 - +0.9 525,950 + +3.1 525,950 + +3.1 525,950 + +2.1
Or see this region's nucleotide sequence