Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01830 and ABZR87_RS01835 are separated by 26 nucleotides ABZR87_RS01835 and ABZR87_RS01840 are separated by 171 nucleotides ABZR87_RS01840 and ABZR87_RS01845 are separated by 259 nucleotides
ABZR87_RS01830: ABZR87_RS01830 - octaprenyl diphosphate synthase, at 388,334 to 389,263
_RS01830
ABZR87_RS01835: ABZR87_RS01835 - tRNA-Pro, at 389,290 to 389,366
_RS01835
ABZR87_RS01840: ABZR87_RS01840 - HlyC/CorC family transporter, at 389,538 to 390,812
_RS01840
ABZR87_RS01845: ABZR87_RS01845 - type IV-A pilus assembly ATPase PilB, at 391,072 to 392,799
_RS01845
Position (kb) 389
390
391 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 389.454 kb on + strand at 389.454 kb on + strand at 389.454 kb on + strand at 389.454 kb on + strand at 389.455 kb on - strand at 389.455 kb on - strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.504 kb on - strand at 389.504 kb on - strand at 389.504 kb on - strand at 389.504 kb on - strand at 389.504 kb on - strand at 389.504 kb on - strand at 389.505 kb on + strand at 389.506 kb on - strand at 389.506 kb on - strand at 389.506 kb on - strand at 389.674 kb on + strand, within ABZR87_RS01840 at 389.674 kb on + strand, within ABZR87_RS01840 at 389.674 kb on + strand, within ABZR87_RS01840 at 389.675 kb on - strand, within ABZR87_RS01840 at 389.675 kb on - strand, within ABZR87_RS01840 at 389.675 kb on - strand, within ABZR87_RS01840 at 389.675 kb on - strand, within ABZR87_RS01840 at 389.690 kb on + strand, within ABZR87_RS01840 at 389.690 kb on + strand, within ABZR87_RS01840 at 389.690 kb on + strand, within ABZR87_RS01840 at 389.690 kb on + strand, within ABZR87_RS01840 at 389.690 kb on + strand, within ABZR87_RS01840 at 389.691 kb on - strand, within ABZR87_RS01840 at 389.691 kb on - strand, within ABZR87_RS01840 at 389.691 kb on - strand, within ABZR87_RS01840 at 389.691 kb on - strand, within ABZR87_RS01840 at 389.691 kb on - strand, within ABZR87_RS01840 at 389.800 kb on - strand, within ABZR87_RS01840 at 389.800 kb on - strand, within ABZR87_RS01840 at 389.800 kb on - strand, within ABZR87_RS01840 at 389.855 kb on - strand, within ABZR87_RS01840 at 389.855 kb on - strand, within ABZR87_RS01840 at 389.855 kb on - strand, within ABZR87_RS01840 at 390.023 kb on + strand, within ABZR87_RS01840 at 390.023 kb on + strand, within ABZR87_RS01840 at 390.023 kb on + strand, within ABZR87_RS01840 at 390.023 kb on + strand, within ABZR87_RS01840 at 390.024 kb on - strand, within ABZR87_RS01840 at 390.243 kb on + strand, within ABZR87_RS01840 at 390.243 kb on + strand, within ABZR87_RS01840 at 390.243 kb on + strand, within ABZR87_RS01840 at 390.243 kb on + strand, within ABZR87_RS01840 at 390.244 kb on - strand, within ABZR87_RS01840 at 390.244 kb on - strand, within ABZR87_RS01840 at 390.244 kb on - strand, within ABZR87_RS01840 at 390.244 kb on - strand, within ABZR87_RS01840 at 390.341 kb on + strand, within ABZR87_RS01840 at 390.342 kb on - strand, within ABZR87_RS01840 at 390.342 kb on - strand, within ABZR87_RS01840 at 390.342 kb on - strand, within ABZR87_RS01840 at 390.342 kb on - strand, within ABZR87_RS01840 at 390.342 kb on - strand, within ABZR87_RS01840 at 390.379 kb on - strand, within ABZR87_RS01840 at 390.379 kb on - strand, within ABZR87_RS01840 at 390.379 kb on - strand, within ABZR87_RS01840 at 390.415 kb on + strand, within ABZR87_RS01840 at 390.415 kb on + strand, within ABZR87_RS01840 at 390.415 kb on + strand, within ABZR87_RS01840 at 390.415 kb on + strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.420 kb on + strand, within ABZR87_RS01840 at 390.420 kb on + strand, within ABZR87_RS01840 at 390.421 kb on - strand, within ABZR87_RS01840 at 390.421 kb on - strand, within ABZR87_RS01840 at 390.465 kb on + strand, within ABZR87_RS01840 at 390.465 kb on + strand, within ABZR87_RS01840 at 390.466 kb on - strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.580 kb on - strand, within ABZR87_RS01840 at 390.580 kb on - strand, within ABZR87_RS01840 at 390.580 kb on - strand, within ABZR87_RS01840 at 390.580 kb on - strand, within ABZR87_RS01840 at 390.740 kb on + strand at 390.775 kb on + strand at 390.806 kb on + strand at 390.806 kb on + strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.861 kb on - strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 391.091 kb on + strand at 391.092 kb on - strand at 391.122 kb on - strand at 391.122 kb on - strand at 391.234 kb on + strand at 391.234 kb on + strand at 391.235 kb on - strand at 391.235 kb on - strand at 391.264 kb on + strand, within ABZR87_RS01845 at 391.264 kb on + strand, within ABZR87_RS01845 at 391.265 kb on - strand, within ABZR87_RS01845 at 391.265 kb on - strand, within ABZR87_RS01845 at 391.265 kb on - strand, within ABZR87_RS01845 at 391.540 kb on + strand, within ABZR87_RS01845 at 391.541 kb on - strand, within ABZR87_RS01845 at 391.541 kb on - strand, within ABZR87_RS01845 at 391.629 kb on + strand, within ABZR87_RS01845 at 391.687 kb on + strand, within ABZR87_RS01845 at 391.687 kb on + strand, within ABZR87_RS01845
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 389,454 + -0.4 389,454 + -0.8 389,454 + +0.4 389,454 + +1.5 389,455 - -0.3 389,455 - +1.1 389,503 + +1.6 389,503 + +0.5 389,503 + -0.5 389,503 + -1.6 389,503 + +1.4 389,503 + -2.3 389,503 + +0.9 389,503 + +1.4 389,503 + -2.1 389,503 + +0.9 389,504 - +0.7 389,504 - +0.1 389,504 - -1.8 389,504 - -1.0 389,504 - -0.6 389,504 - -0.4 389,505 + +1.1 389,506 - +0.4 389,506 - -0.5 389,506 - -1.6 389,674 + ABZR87_RS01840 0.11 +0.5 389,674 + ABZR87_RS01840 0.11 +0.5 389,674 + ABZR87_RS01840 0.11 -2.4 389,675 - ABZR87_RS01840 0.11 -2.6 389,675 - ABZR87_RS01840 0.11 +1.7 389,675 - ABZR87_RS01840 0.11 -1.2 389,675 - ABZR87_RS01840 0.11 -2.4 389,690 + ABZR87_RS01840 0.12 -3.6 389,690 + ABZR87_RS01840 0.12 +0.1 389,690 + ABZR87_RS01840 0.12 -2.5 389,690 + ABZR87_RS01840 0.12 +1.2 389,690 + ABZR87_RS01840 0.12 +0.4 389,691 - ABZR87_RS01840 0.12 -0.8 389,691 - ABZR87_RS01840 0.12 +3.1 389,691 - ABZR87_RS01840 0.12 +0.3 389,691 - ABZR87_RS01840 0.12 -0.6 389,691 - ABZR87_RS01840 0.12 +0.4 389,800 - ABZR87_RS01840 0.21 -1.1 389,800 - ABZR87_RS01840 0.21 +0.3 389,800 - ABZR87_RS01840 0.21 -2.3 389,855 - ABZR87_RS01840 0.25 +1.1 389,855 - ABZR87_RS01840 0.25 -1.2 389,855 - ABZR87_RS01840 0.25 -0.6 390,023 + ABZR87_RS01840 0.38 +1.6 390,023 + ABZR87_RS01840 0.38 -0.5 390,023 + ABZR87_RS01840 0.38 +1.7 390,023 + ABZR87_RS01840 0.38 +0.3 390,024 - ABZR87_RS01840 0.38 +0.3 390,243 + ABZR87_RS01840 0.55 -0.2 390,243 + ABZR87_RS01840 0.55 -1.5 390,243 + ABZR87_RS01840 0.55 -0.4 390,243 + ABZR87_RS01840 0.55 +1.4 390,244 - ABZR87_RS01840 0.55 -3.3 390,244 - ABZR87_RS01840 0.55 +2.1 390,244 - ABZR87_RS01840 0.55 -1.7 390,244 - ABZR87_RS01840 0.55 +0.1 390,341 + ABZR87_RS01840 0.63 -0.2 390,342 - ABZR87_RS01840 0.63 -1.5 390,342 - ABZR87_RS01840 0.63 -3.3 390,342 - ABZR87_RS01840 0.63 -0.3 390,342 - ABZR87_RS01840 0.63 -0.1 390,342 - ABZR87_RS01840 0.63 +0.1 390,379 - ABZR87_RS01840 0.66 +0.5 390,379 - ABZR87_RS01840 0.66 +0.6 390,379 - ABZR87_RS01840 0.66 -1.2 390,415 + ABZR87_RS01840 0.69 -2.6 390,415 + ABZR87_RS01840 0.69 -0.4 390,415 + ABZR87_RS01840 0.69 -0.2 390,415 + ABZR87_RS01840 0.69 -0.5 390,416 - ABZR87_RS01840 0.69 +2.1 390,416 - ABZR87_RS01840 0.69 -0.3 390,416 - ABZR87_RS01840 0.69 +0.8 390,416 - ABZR87_RS01840 0.69 +3.7 390,416 - ABZR87_RS01840 0.69 +0.2 390,416 - ABZR87_RS01840 0.69 +1.5 390,416 - ABZR87_RS01840 0.69 +0.9 390,416 - ABZR87_RS01840 0.69 -0.8 390,416 - ABZR87_RS01840 0.69 -1.1 390,420 + ABZR87_RS01840 0.69 -0.0 390,420 + ABZR87_RS01840 0.69 +0.0 390,421 - ABZR87_RS01840 0.69 -0.5 390,421 - ABZR87_RS01840 0.69 -0.8 390,465 + ABZR87_RS01840 0.73 +0.7 390,465 + ABZR87_RS01840 0.73 -0.2 390,466 - ABZR87_RS01840 0.73 -1.1 390,579 + ABZR87_RS01840 0.82 -0.0 390,579 + ABZR87_RS01840 0.82 +0.5 390,579 + ABZR87_RS01840 0.82 -0.1 390,579 + ABZR87_RS01840 0.82 +1.1 390,579 + ABZR87_RS01840 0.82 -0.2 390,579 + ABZR87_RS01840 0.82 +2.4 390,579 + ABZR87_RS01840 0.82 +0.3 390,579 + ABZR87_RS01840 0.82 +0.1 390,579 + ABZR87_RS01840 0.82 +0.1 390,579 + ABZR87_RS01840 0.82 -1.3 390,580 - ABZR87_RS01840 0.82 -0.0 390,580 - ABZR87_RS01840 0.82 +0.4 390,580 - ABZR87_RS01840 0.82 -0.4 390,580 - ABZR87_RS01840 0.82 +0.6 390,740 + +1.4 390,775 + +3.9 390,806 + -2.8 390,806 + +0.6 390,807 - -1.6 390,807 - +0.1 390,807 - -0.4 390,807 - +0.2 390,807 - -1.8 390,807 - +0.6 390,807 - +0.7 390,807 - -0.5 390,861 - -0.8 390,979 + +1.1 390,979 + +0.2 390,979 + -1.4 390,979 + -0.2 390,979 + -1.6 390,979 + -0.7 390,979 + +1.1 390,979 + -2.8 390,979 + -1.0 390,979 + +0.2 390,979 + +0.4 390,979 + -0.4 390,979 + -1.1 390,979 + -0.3 390,979 + +0.2 390,979 + +0.3 390,980 - -0.9 390,980 - -1.0 390,980 - -1.7 390,980 - +0.4 390,980 - +0.2 390,980 - -0.1 390,980 - -1.2 390,980 - -2.5 390,980 - -0.6 390,980 - -2.6 390,980 - +0.1 390,980 - -2.5 390,980 - -0.3 390,980 - -1.6 390,980 - -3.0 391,091 + -1.5 391,092 - +0.2 391,122 - +0.1 391,122 - -0.4 391,234 + +0.2 391,234 + +0.7 391,235 - -1.9 391,235 - +1.5 391,264 + ABZR87_RS01845 0.11 +0.6 391,264 + ABZR87_RS01845 0.11 +0.5 391,265 - ABZR87_RS01845 0.11 -1.1 391,265 - ABZR87_RS01845 0.11 +1.5 391,265 - ABZR87_RS01845 0.11 +0.1 391,540 + ABZR87_RS01845 0.27 -0.1 391,541 - ABZR87_RS01845 0.27 -1.8 391,541 - ABZR87_RS01845 0.27 -1.3 391,629 + ABZR87_RS01845 0.32 -0.3 391,687 + ABZR87_RS01845 0.36 +0.9 391,687 + ABZR87_RS01845 0.36 +1.1
Or see this region's nucleotide sequence