Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01060

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01055 and ABZR87_RS01060 are separated by 111 nucleotidesABZR87_RS01060 and ABZR87_RS01065 are separated by 10 nucleotides ABZR87_RS01055: ABZR87_RS01055 - heat-inducible transcriptional repressor HrcA, at 210,837 to 211,895 _RS01055 ABZR87_RS01060: ABZR87_RS01060 - NAD kinase, at 212,007 to 212,945 _RS01060 ABZR87_RS01065: ABZR87_RS01065 - DNA repair protein RecN, at 212,956 to 214,662 _RS01065 Position (kb) 212 213Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 211.053 kb on + strand, within ABZR87_RS01055at 211.054 kb on - strand, within ABZR87_RS01055at 211.115 kb on + strand, within ABZR87_RS01055at 211.116 kb on - strand, within ABZR87_RS01055at 211.118 kb on - strand, within ABZR87_RS01055at 211.321 kb on + strand, within ABZR87_RS01055at 211.321 kb on + strand, within ABZR87_RS01055at 211.321 kb on + strand, within ABZR87_RS01055at 211.321 kb on + strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.325 kb on + strand, within ABZR87_RS01055at 211.325 kb on + strand, within ABZR87_RS01055at 211.355 kb on - strand, within ABZR87_RS01055at 211.355 kb on - strand, within ABZR87_RS01055at 211.355 kb on - strand, within ABZR87_RS01055at 211.670 kb on + strand, within ABZR87_RS01055at 211.804 kb on + strandat 211.804 kb on + strandat 211.805 kb on - strandat 211.848 kb on - strandat 211.849 kb on + strandat 211.849 kb on + strandat 211.849 kb on + strandat 211.849 kb on + strandat 211.849 kb on + strandat 211.850 kb on - strandat 211.850 kb on - strandat 211.850 kb on - strandat 211.850 kb on - strandat 211.851 kb on - strandat 211.984 kb on + strandat 211.985 kb on - strandat 211.985 kb on - strandat 211.987 kb on - strandat 211.988 kb on + strandat 211.991 kb on - strandat 211.997 kb on + strandat 211.997 kb on + strandat 211.997 kb on + strandat 211.997 kb on + strandat 212.943 kb on + strandat 212.944 kb on - strandat 212.944 kb on - strandat 213.027 kb on + strandat 213.028 kb on - strandat 213.028 kb on - strandat 213.032 kb on + strandat 213.188 kb on + strand, within ABZR87_RS01065at 213.581 kb on + strand, within ABZR87_RS01065at 213.582 kb on - strand, within ABZR87_RS01065at 213.582 kb on - strand, within ABZR87_RS01065at 213.582 kb on - strand, within ABZR87_RS01065at 213.702 kb on + strand, within ABZR87_RS01065at 213.702 kb on + strand, within ABZR87_RS01065at 213.703 kb on - strand, within ABZR87_RS01065at 213.703 kb on - strand, within ABZR87_RS01065at 213.703 kb on - strand, within ABZR87_RS01065at 213.808 kb on + strand, within ABZR87_RS01065at 213.809 kb on - strand, within ABZR87_RS01065

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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211,053 + ABZR87_RS01055 0.20 +0.1
211,054 - ABZR87_RS01055 0.20 -0.5
211,115 + ABZR87_RS01055 0.26 -1.1
211,116 - ABZR87_RS01055 0.26 -1.8
211,118 - ABZR87_RS01055 0.27 -0.3
211,321 + ABZR87_RS01055 0.46 -1.7
211,321 + ABZR87_RS01055 0.46 -0.3
211,321 + ABZR87_RS01055 0.46 -0.5
211,321 + ABZR87_RS01055 0.46 -0.6
211,322 - ABZR87_RS01055 0.46 -0.6
211,322 - ABZR87_RS01055 0.46 -3.5
211,322 - ABZR87_RS01055 0.46 +1.2
211,322 - ABZR87_RS01055 0.46 +1.2
211,322 - ABZR87_RS01055 0.46 -2.9
211,322 - ABZR87_RS01055 0.46 -1.8
211,322 - ABZR87_RS01055 0.46 +1.1
211,322 - ABZR87_RS01055 0.46 +1.4
211,322 - ABZR87_RS01055 0.46 -2.0
211,322 - ABZR87_RS01055 0.46 -0.5
211,322 - ABZR87_RS01055 0.46 -1.4
211,322 - ABZR87_RS01055 0.46 -1.0
211,325 + ABZR87_RS01055 0.46 -0.3
211,325 + ABZR87_RS01055 0.46 -0.6
211,355 - ABZR87_RS01055 0.49 -1.2
211,355 - ABZR87_RS01055 0.49 -0.6
211,355 - ABZR87_RS01055 0.49 -0.8
211,670 + ABZR87_RS01055 0.79 +0.2
211,804 + +0.8
211,804 + -0.0
211,805 - +1.1
211,848 - +0.8
211,849 + -0.7
211,849 + +0.4
211,849 + +2.1
211,849 + -2.4
211,849 + -0.3
211,850 - -0.1
211,850 - -0.7
211,850 - -1.7
211,850 - +1.1
211,851 - +1.6
211,984 + +0.0
211,985 - +1.2
211,985 - -3.0
211,987 - -1.5
211,988 + +1.2
211,991 - +2.0
211,997 + +0.7
211,997 + +0.0
211,997 + +0.3
211,997 + +0.4
212,943 + +0.7
212,944 - +0.0
212,944 - -1.1
213,027 + +0.7
213,028 - -0.7
213,028 - +0.6
213,032 + +1.4
213,188 + ABZR87_RS01065 0.14 -0.4
213,581 + ABZR87_RS01065 0.37 +0.6
213,582 - ABZR87_RS01065 0.37 +0.6
213,582 - ABZR87_RS01065 0.37 -0.3
213,582 - ABZR87_RS01065 0.37 -1.4
213,702 + ABZR87_RS01065 0.44 -0.1
213,702 + ABZR87_RS01065 0.44 +3.0
213,703 - ABZR87_RS01065 0.44 +1.0
213,703 - ABZR87_RS01065 0.44 +0.4
213,703 - ABZR87_RS01065 0.44 -0.2
213,808 + ABZR87_RS01065 0.50 -0.2
213,809 - ABZR87_RS01065 0.50 +1.1

Or see this region's nucleotide sequence