Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01045

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01035 and ABZR87_RS01040 are separated by 7 nucleotidesABZR87_RS01040 and ABZR87_RS01045 overlap by 4 nucleotidesABZR87_RS01045 and ABZR87_RS01050 overlap by 4 nucleotides ABZR87_RS01035: ABZR87_RS01035 - histidine utilization repressor, at 207,272 to 207,985 _RS01035 ABZR87_RS01040: ABZR87_RS01040 - ABC transporter permease subunit, at 207,993 to 208,862 _RS01040 ABZR87_RS01045: ABZR87_RS01045 - ATP-binding cassette domain-containing protein, at 208,859 to 209,650 _RS01045 ABZR87_RS01050: ABZR87_RS01050 - taurine ABC transporter substrate-binding protein, at 209,647 to 210,711 _RS01050 Position (kb) 208 209 210Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 208.288 kb on + strand, within ABZR87_RS01040at 208.369 kb on + strand, within ABZR87_RS01040at 208.369 kb on + strand, within ABZR87_RS01040at 208.369 kb on + strand, within ABZR87_RS01040at 208.369 kb on + strand, within ABZR87_RS01040at 208.370 kb on - strand, within ABZR87_RS01040at 208.370 kb on - strand, within ABZR87_RS01040at 208.370 kb on - strand, within ABZR87_RS01040at 208.370 kb on - strand, within ABZR87_RS01040at 208.429 kb on + strand, within ABZR87_RS01040at 208.429 kb on + strand, within ABZR87_RS01040at 208.429 kb on + strand, within ABZR87_RS01040at 208.430 kb on - strand, within ABZR87_RS01040at 208.430 kb on - strand, within ABZR87_RS01040at 208.430 kb on - strand, within ABZR87_RS01040at 208.453 kb on + strand, within ABZR87_RS01040at 208.521 kb on + strand, within ABZR87_RS01040at 208.522 kb on - strand, within ABZR87_RS01040at 208.726 kb on - strand, within ABZR87_RS01040at 208.901 kb on + strandat 208.902 kb on - strandat 209.234 kb on - strand, within ABZR87_RS01045at 209.250 kb on + strand, within ABZR87_RS01045at 209.250 kb on + strand, within ABZR87_RS01045at 209.251 kb on - strand, within ABZR87_RS01045at 209.251 kb on - strand, within ABZR87_RS01045at 209.251 kb on - strand, within ABZR87_RS01045at 209.613 kb on + strandat 209.613 kb on + strandat 209.613 kb on + strandat 209.614 kb on - strandat 209.726 kb on + strandat 209.727 kb on - strandat 209.864 kb on + strand, within ABZR87_RS01050at 209.864 kb on + strand, within ABZR87_RS01050at 209.864 kb on + strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.969 kb on + strand, within ABZR87_RS01050at 209.969 kb on + strand, within ABZR87_RS01050at 209.969 kb on + strand, within ABZR87_RS01050at 210.153 kb on + strand, within ABZR87_RS01050at 210.153 kb on + strand, within ABZR87_RS01050at 210.154 kb on - strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.296 kb on - strand, within ABZR87_RS01050at 210.528 kb on + strand, within ABZR87_RS01050at 210.528 kb on + strand, within ABZR87_RS01050at 210.528 kb on + strand, within ABZR87_RS01050at 210.528 kb on + strand, within ABZR87_RS01050at 210.529 kb on - strand, within ABZR87_RS01050at 210.529 kb on - strand, within ABZR87_RS01050at 210.529 kb on - strand, within ABZR87_RS01050at 210.530 kb on + strand, within ABZR87_RS01050at 210.530 kb on + strand, within ABZR87_RS01050at 210.596 kb on + strand, within ABZR87_RS01050

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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208,288 + ABZR87_RS01040 0.34 +0.2
208,369 + ABZR87_RS01040 0.43 -0.2
208,369 + ABZR87_RS01040 0.43 -0.0
208,369 + ABZR87_RS01040 0.43 +0.4
208,369 + ABZR87_RS01040 0.43 +0.5
208,370 - ABZR87_RS01040 0.43 -0.7
208,370 - ABZR87_RS01040 0.43 +0.9
208,370 - ABZR87_RS01040 0.43 -0.7
208,370 - ABZR87_RS01040 0.43 +2.4
208,429 + ABZR87_RS01040 0.50 +0.4
208,429 + ABZR87_RS01040 0.50 -0.4
208,429 + ABZR87_RS01040 0.50 -0.9
208,430 - ABZR87_RS01040 0.50 -2.9
208,430 - ABZR87_RS01040 0.50 +0.7
208,430 - ABZR87_RS01040 0.50 -1.4
208,453 + ABZR87_RS01040 0.53 -0.1
208,521 + ABZR87_RS01040 0.61 +0.3
208,522 - ABZR87_RS01040 0.61 +0.4
208,726 - ABZR87_RS01040 0.84 -1.9
208,901 + -0.2
208,902 - -1.6
209,234 - ABZR87_RS01045 0.47 -0.8
209,250 + ABZR87_RS01045 0.49 +0.7
209,250 + ABZR87_RS01045 0.49 -1.7
209,251 - ABZR87_RS01045 0.49 +0.5
209,251 - ABZR87_RS01045 0.49 -0.5
209,251 - ABZR87_RS01045 0.49 -1.3
209,613 + +0.4
209,613 + -0.6
209,613 + +0.0
209,614 - -0.7
209,726 + -1.0
209,727 - -0.0
209,864 + ABZR87_RS01050 0.20 -2.1
209,864 + ABZR87_RS01050 0.20 +0.3
209,864 + ABZR87_RS01050 0.20 +0.3
209,865 - ABZR87_RS01050 0.20 +0.7
209,865 - ABZR87_RS01050 0.20 +0.3
209,865 - ABZR87_RS01050 0.20 -0.3
209,865 - ABZR87_RS01050 0.20 -0.0
209,865 - ABZR87_RS01050 0.20 -0.0
209,865 - ABZR87_RS01050 0.20 +0.2
209,865 - ABZR87_RS01050 0.20 +0.8
209,865 - ABZR87_RS01050 0.20 -1.1
209,969 + ABZR87_RS01050 0.30 -0.4
209,969 + ABZR87_RS01050 0.30 +0.9
209,969 + ABZR87_RS01050 0.30 +2.5
210,153 + ABZR87_RS01050 0.48 -1.3
210,153 + ABZR87_RS01050 0.48 -0.5
210,154 - ABZR87_RS01050 0.48 -3.7
210,290 + ABZR87_RS01050 0.60 -0.6
210,290 + ABZR87_RS01050 0.60 -2.1
210,290 + ABZR87_RS01050 0.60 -0.3
210,290 + ABZR87_RS01050 0.60 +1.0
210,290 + ABZR87_RS01050 0.60 +0.2
210,290 + ABZR87_RS01050 0.60 -0.1
210,290 + ABZR87_RS01050 0.60 -1.1
210,290 + ABZR87_RS01050 0.60 -0.3
210,290 + ABZR87_RS01050 0.60 +0.6
210,291 - ABZR87_RS01050 0.60 -1.8
210,291 - ABZR87_RS01050 0.60 -0.1
210,291 - ABZR87_RS01050 0.60 -0.4
210,291 - ABZR87_RS01050 0.60 -0.2
210,291 - ABZR87_RS01050 0.60 +0.8
210,291 - ABZR87_RS01050 0.60 +1.0
210,291 - ABZR87_RS01050 0.60 -1.4
210,291 - ABZR87_RS01050 0.60 -0.3
210,291 - ABZR87_RS01050 0.60 -0.3
210,291 - ABZR87_RS01050 0.60 +1.4
210,291 - ABZR87_RS01050 0.60 +0.7
210,291 - ABZR87_RS01050 0.60 -0.5
210,296 - ABZR87_RS01050 0.61 -0.5
210,528 + ABZR87_RS01050 0.83 -0.5
210,528 + ABZR87_RS01050 0.83 +0.4
210,528 + ABZR87_RS01050 0.83 +2.3
210,528 + ABZR87_RS01050 0.83 +0.5
210,529 - ABZR87_RS01050 0.83 +1.8
210,529 - ABZR87_RS01050 0.83 -0.3
210,529 - ABZR87_RS01050 0.83 +1.3
210,530 + ABZR87_RS01050 0.83 +0.9
210,530 + ABZR87_RS01050 0.83 +0.8
210,596 + ABZR87_RS01050 0.89 -1.7

Or see this region's nucleotide sequence